KEGG T04739: BEE12

Pantoea agglomerans C410P1: BEE12_04420

Entry

BEE12_04420       CDS       T04739

Name

(GenBank) ribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

pagc Pantoea agglomerans C410P1

Pathway

pagc03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:pagc00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BEE12_04420
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pagc03019]
    BEE12_04420
   03016 Transfer RNA biogenesis [BR:pagc03016]
    BEE12_04420
Enzymes [BR:pagc01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BEE12_04420
Messenger RNA biogenesis [BR:pagc03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BEE12_04420
Transfer RNA biogenesis [BR:pagc03016]
Prokaryotic type
  tRNA degradation factors
   BEE12_04420

SSDB

Motif

Pfam:

RNB OB_RNB CSD2 S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind LexA_DNA_bind YqfQ

Other DBs

NCBI-ProteinID:

AOE39178

Position

complement(1007644..1010136)

AA seq 830 aa
MSKDPFQDREAEKYENPIPSREFILALLEKREKPASREELAEEMNLQEEEHLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLLRGKVIGHRDGYGFLRAEGQKDDLYLSAEQMKFCMH
GDVILAQPLGADRKGRREARVVRVQEPRNNQIVGRYFTDAGAGFVVPDDSRLSFDILIPP
EETMNARMGSVVVVELVQRPNRRSKAIGKIAEILGDDMGTSLAVDMALRTHEIPHTWPPE
VEAQVSKLKEEVPEEAKKGRVDLRKLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPGTPLDDEAHQRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS
TKGKLTGFKHYEAVMNSHARLTYNKVWNILQGDKELRQQYAPLVKDLEELNNLYHALEAA
REERGGISFETEEAKFIFNAERRIERVERVSRNDAHKLIEECMILANIASARFVEKNQEP
ALFRDHDRPTDESIKSFRTVLNELGLSLPGGNKPQPIDYAALLKQVADRPDAEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLTLHRAIKYLLAKEQDEGKGLVQRA
IKYLMPRDRSVAKDMTTATGGYHYDMPQMLQLGLHCSLTERRADEATRDVADWLKCDFMQ
DQVGNVFNGVISSVTGFGFFVRLSDLFIDGLVHVSTLDNDYYRFDPVGQRLIGESGGRTY
RLGDTVEVRVEAVHMDERKIDFALISSQRQVRGEGKTARDRAKRDDKAPAKRRRDASKKS
NFEPDAAFRGDKGKPAAANTENKSKNVSEKTRKIAAATRAKRARKKAQPD

NT seq 2493 nt +upstreamnt +downstreamnt
atgtcaaaagatccttttcaggatagagaagctgaaaaatacgaaaatcctattccgagc
cgtgaatttattctggctctgttagaaaaacgtgaaaaaccggccagccgtgaagagctg
gctgaagagatgaatctgcaggaagaagaacaccttgaggcgctgcgtcgccgccttcgc
gccatggagcgtgatggtcagctggtgttcacccgccgtcagtgttatgccctgcctgaa
cgtcttgatctcctgcgcggtaaagtcattggccaccgagacggctacggcttcctgcgg
gcagaaggtcagaaagatgacctctacctttccgcagaacagatgaaattctgtatgcac
ggtgacgtaatcctggcgcagccgctgggtgccgatcgcaaaggccgccgcgaagcgcgc
gtggtccgggtgcaggaaccccgcaacaatcagatcgttggccgttactttaccgatgcc
ggtgccggcttcgtggtgccggacgatagtcgcctgagttttgacatcctcatcccgcct
gaagagacgatgaatgcccgcatgggttccgtggtggtggttgagctggtccagcgtccg
aaccgtcgcagcaaagcgatcggtaaaatcgccgagattctgggcgatgatatgggcacc
agcctggccgtggatatggcgctgcgtacgcatgaaatcccgcacacctggccgccggaa
gtggaagctcaggtcagtaaactgaaagaagaagtcccggaagaggccaaaaaaggccgc
gtcgatctgcgtaagctgccgctggtcaccatcgatggtgaagatgcccgtgactttgat
gatgctgtttactgtgagaagaagcgcggtggcggatggcgcctgtgggtggctatcgcg
gatgtcagctattacgtccgtcctggcactccactggatgacgaagcgcatcagcgcgga
acctcggtctacttcccgtcgcaggttgtgccgatgctgccggaagtgctgtcgaatggc
ttatgttcgcttaacccacaggtcgatcgcctctgtatggtgtgcgagatgaccatctcg
accaaaggtaaactgaccggcttcaagcactacgaagcggtgatgaactcccatgcgcgt
ctgacctacaacaaagtctggaacatcctgcagggcgacaaagagctgcgtcagcagtat
gcgccgctggttaaagaccttgaagagctgaacaacctctatcatgcgctggaagccgct
cgtgaagagcgcggcggtatctcgtttgaaacggaagaggcgaagtttatcttcaacgcc
gagcgccgtattgagcgtgttgagcgagtgtcacgtaatgacgctcataagctgatcgaa
gagtgcatgatccttgctaacatcgcctcggcacgcttcgttgagaaaaatcaggaaccg
gcgctgttccgcgatcacgatcgcccgactgacgaaagcatcaagagcttccgtaccgtg
ctcaacgagctgggactgagtctgcctggcggcaacaaaccgcagccaatcgactatgcg
gcgctgctgaagcaggttgccgatcgtcctgatgcggaaatgctgcaaaccatgctgctg
cgttcgatgaagcaggccgtttacgacccggaaaaccgtggtcactttggtctggcactc
tcgtcgtatgcgcactttacctcgccaatccgtcgttacccggatctgacgctgcatcgc
gccatcaaatatctgctggcaaaagagcaggatgaaggtaaaggcctggtacagcgcgct
attaaatacctgatgccgagagatcgcagcgtcgccaaagatatgacgacagcaaccggt
ggctatcactacgacatgccgcagatgctgcaactgggcctgcactgttctctgaccgaa
cgccgcgccgatgaagcgacccgtgacgtcgcggactggctcaagtgtgacttcatgcag
gatcaggttggcaacgtcttcaacggcgtcatctccagcgtgaccggatttggcttcttt
gtacgcttaagcgatctgttcattgatggcctggtccacgtttcgacactcgacaacgat
tactaccgttttgacccggtaggtcagcgtctgatcggtgaatcgggcggtcgcacctat
cgtctgggtgacacggttgaagtgcgtgttgaagccgtccatatggatgagcgtaaaatc
gactttgccctgatctccagccagcgtcaggtacgtggtgaaggcaaaaccgcacgtgac
cgggcgaagcgtgacgacaaagcgccagcgaaacgccgtcgtgatgcgagcaagaagtcc
aacttcgagccggacgccgctttccggggcgacaagggtaagcccgccgctgcaaatacc
gagaataaaagtaaaaacgtctcggaaaaaacccgtaaaatcgccgccgccacccgggcg
aagcgcgccagaaaaaaggcgcagcctgactga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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