KEGG   Pantoea vagans FDAARGOS_160: AL522_18065
Entry
AL522_18065       CDS       T04302                                 
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
pagg  Pantoea vagans FDAARGOS_160
Pathway
pagg03030  DNA replication
pagg03410  Base excision repair
pagg03420  Nucleotide excision repair
pagg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:pagg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    AL522_18065 (ligA)
   03410 Base excision repair
    AL522_18065 (ligA)
   03420 Nucleotide excision repair
    AL522_18065 (ligA)
   03430 Mismatch repair
    AL522_18065 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pagg03032]
    AL522_18065 (ligA)
   03400 DNA repair and recombination proteins [BR:pagg03400]
    AL522_18065 (ligA)
Enzymes [BR:pagg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     AL522_18065 (ligA)
DNA replication proteins [BR:pagg03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     AL522_18065 (ligA)
DNA repair and recombination proteins [BR:pagg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     AL522_18065 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     AL522_18065 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     AL522_18065 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      AL522_18065 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc zf-NADH-PPase DZR_2 RNA_ligase Prok-E2_C
Other DBs
NCBI-ProteinID: AMG59380
Position
complement(3126294..3128312)
AA seq 672 aa
MKSVQDHITELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELHHLEEEHPDLITADSPTQ
RVGAAPLTVFEQVRHEVPMLSLDNAFDEATFMAFNKRVQDRLKSSDDITYCCELKLDGAA
VSLMYVNGLLVRAATRGDGTTGENITANVRTIRAIPLRLKGDNIPARLEVRGEIFMTQRG
FEKLNEEARRTDGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPHSHM
GRLQQFKAWGLPVSDRIKRVHNVEEALAFYRDIEQQRPNLGFDIDGVVIKVDSQALQEQL
GFVARAPRWAIAFKFPAQEQLTWVRDVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVVNVVITERPEETREVIFPAHCPVCGSEVERVEG
ESVTRCTGGLICGAQRKEALKHFVSRRALDVDGMGDKIIDQLVEKEYVNTPADLFRLTAG
KLTGLDRMGPKSAQNIVDALEKAKSTTLARFLYALGIREVGEATAANLANHFGELQKVMD
ADLEALIAVPDVGKVVAAHVRNFMEEESNREVIRQLTDDIGIHWPQVVVVKAEEIDSPFA
GKTVVLTGSLSQMNRDDAKAQLIALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGA
NT seq 2019 nt   +upstreamnt  +downstreamnt
atgaaatccgtccaggatcacatcaccgaactgcgcaccacgttgcgccatcacgaatat
ctctatcacgtcatggatgcgccggaagtgccggatgccgaatatgatcgtctgatgcgt
gaactgcatcatctggaagaggaacaccccgatctcattacggcggactcgccgacgcaa
cgcgtaggtgctgcgccgctgacggtatttgagcaggtccgccacgaagtcccgatgctg
tcgctggataacgcctttgatgaagccacgttcatggccttcaacaagcgcgtgcaggat
cggctgaaaagcagtgacgacatcacctactgctgtgaactcaagctcgatggtgctgca
gtcagcctgatgtatgtaaatggcctgctggtccgggccgcgacgcgtggtgacggtact
accggcgagaacattaccgccaacgtccgtaccattcgcgcgattccgctgcggctaaaa
ggcgacaatatcccggcccggctagaagtacgcggcgaaatatttatgacgcagcgcggc
ttcgaaaagctgaatgaggaagcgcgacgcactgacggcaaagtctttgctaacccgcgt
aacgcagctgcaggttctctgcgtcagcttgatccgcgtatcaccgctaaacgtccgctg
accttcttctgctacggtttcggcctgctggaaggcggggagatgccgcacagtcacatg
gggcgcctgcaacagttcaaagcctggggcctgccggtcagcgaccgcattaagcgggtg
cacaacgtcgaagaagccctggctttctatcgggatattgagcaacagcgtccgaacctg
ggtttcgatattgatggcgtggtgatcaaggtcgattcacaggcattacaggagcaactg
ggctttgtggcgcgcgcaccgcgctgggcaattgccttcaaattcccggcacaggaacag
ctgacctgggtacgtgacgtcgaattccaggttggccgcacgggtgctatcacgccggtg
gctcgtcttgagccggtacaggtggcgggcgtcatcgtcagcaatgccacgctgcataat
gcggatgaaattgagcggctgggattacgcattggcgaccgcgtcgtgattcgccgcgcc
ggtgatgtgatcccgcaggtggtcaacgtggtgattacggagcgcccggaagagacgcgt
gaagtaatttttcctgcccattgtccggtctgtggttccgaagttgaacgggtcgaaggc
gaatcggtcacacgctgcactggcggtctgatctgcggtgcgcaacgtaaagaggcactg
aagcactttgtctcgcgtcgggcgctggatgttgacggtatgggcgataagattatcgat
caactggtggaaaaagagtacgttaatacgcctgccgatcttttccgtctcacggccggc
aagctgaccggactggatcgtatgggaccaaaatcggcgcagaatatcgtcgacgcgctg
gagaaagcgaagtcgaccacgctggcgcgtttcctttatgcgctgggcattcgcgaagtg
ggtgaggctactgccgccaatctggctaaccactttggtgaattgcaaaaggtgatggat
gccgatcttgaggcactgattgccgtgccggatgtcggcaaagtcgtcgccgcacatgtg
cgcaacttcatggaggaggagagcaaccgtgaggttatccgccagctgacagacgacatc
ggcattcactggccgcaggtggtagtggtgaaagccgaagagatcgacagtccgttcgcc
ggtaaaacggtggtgctgactggctcactgtcgcagatgaatcgcgatgatgccaaagcg
cagctaatcgcgctgggggcaaaagtcagcggcagcgtatcgaagaaaaccgatctgctg
attgccggtgaagcggcgggttcaaagctggcaaaagcgcaggagctgggtatagaggta
attgatgaagcggaaatgatccgcctgctgggtgcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (32)   

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