KEGG   Pyrobaculum aerophilum: PAE2207
Entry
PAE2207           CDS       T00073                                 
Name
(GenBank) 3' exoribonuclease family protein
  KO
K11600  exosome complex component RRP41
Organism
pai  Pyrobaculum aerophilum
Pathway
pai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PAE2207
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pai03019]
    PAE2207
Messenger RNA biogenesis [BR:pai03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PAE2207
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     PAE2207
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AAL64027
UniProt: Q8ZVM9
Position
complement(1303626..1304366)
AA seq 246 aa
MKRPPVPLLQNGVRADGRTPDQMREVKIAVGVVSNADGSAMVSYGATTAVAAVYGPREMH
PRHLSLPDRGVMRVRYHMAPFSTKDERKSPTPSRREIEISKILREALEPAIVLEQYPRSR
IDVFVEILQADGSTRVASLTAASLALADAGIYMRDLVVGVSVGLVDGTVVLDLNGLEDQY
GEGDLPLGYMPNLKRFTLLQLDGAWTRDMFLQALNLAVRGAEYVYQIARDALKNKYMSIA
EEIYGR
NT seq 741 nt   +upstreamnt  +downstreamnt
atgaaaaggccgcctgtgccattactccaaaacggagtcagagccgatggccgtactcca
gatcagatgagagaggtcaagatcgcagtaggcgttgtgagcaacgccgacggctcggcg
atggtgtcctacggcgctactaccgccgtggctgcggtatatggacccagggagatgcac
ccccgccacctctctctgccagatcgcggcgtaatgcgcgtcagataccacatggcgccc
ttcagcactaaggacgagaggaaaagcccaactcccagcaggcgggaaattgaaataagc
aaaattctccgagaggcccttgagccggcaatagtgttggagcagtacccgaggtctaga
attgatgtgtttgtggagatactacaggcggacgggtcgactagagtggcctccctcact
gcagcctccctcgcgctggcagatgccggcatttacatgagggacttggtagttggcgtg
tccgtgggccttgttgatggaaccgtcgtgttagacctcaacgggctagaggatcaatac
ggcgaaggggacctcccccttggatatatgccgaatctcaagcgctttactctattgcag
ttagacggggcgtggactagggacatgtttttacaggcgcttaacctcgcagtaagaggg
gctgagtacgtctatcaaatcgccagagatgcgttgaaaaacaaatatatgtcaatagct
gaggagatatacgggaggtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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