KEGG   Pseudomonas alkylphenolica: PSAKL28_04870
Entry
PSAKL28_04870     CDS       T03238                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
palk  Pseudomonas alkylphenolica
Pathway
palk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:palk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PSAKL28_04870
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:palk03021]
    PSAKL28_04870
   03400 DNA repair and recombination proteins [BR:palk03400]
    PSAKL28_04870
Enzymes [BR:palk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PSAKL28_04870
Transcription machinery [BR:palk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PSAKL28_04870
DNA repair and recombination proteins [BR:palk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PSAKL28_04870
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 7TMR-HDED
Other DBs
NCBI-ProteinID: AIL59723
UniProt: A0A077F2S9
Position
549998..554071
AA seq 1357 aa
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYSTEEVLNAFYTTNVFHVSGES
LSLELVPQRLRGEIAVMDIHDETGKVIVEQGRRITARHINQLEKAGVKQLDVPMEYVLGR
TTAKAIVHPATGEILAECNTELNTELLIKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSAERYDLSAVGRMKFNRRIGRTEIE
GSGVLSKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
EGVVTDDIVFLSAIEEADHVIAQASAAMNEKKQLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
VVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALSIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALNGQVVDGGAGLKKGTVITNEVLDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMLEEQRKVIELRKFLTEIYNEIGGRQESLEDFSDQEILDLAKNLKGGVPMATP
VFDGAKESEIKAMLKLADMPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq 4074 nt   +upstreamnt  +downstreamnt
atggcttactcatacactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtgccttacctcctggccatccagctggattcgtatcgtgaattcttgcaa
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatcggtt
ttcccgatcatcagctactccggcaatgctgccctggagtacgttggctatcgtctgggc
gaaccggcttttgatgtcaaagaatgcgtactgcgcggcgtgacctacgcggtaccgctg
cgggtaaaagtccgcctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggtgaaatccccctgatgactgaaaacggtaccttc
gtaatcaacggtaccgagcgtgttatcgtttcccagctgcaccgttcgccgggcgtgttc
ttcgatcacgaccgcggcaaaacgcacagctctggcaaactgctgtactcggcgcggatc
attccttaccgcggttcgtggctggacttcgaattcgatccgaaagactgtgtattcgtc
cgtatcgaccgtcgtcgcaagctgcctgcctcggtactgctgcgcgcgctgggctacagc
actgaagaagtgctcaacgctttctacaccaccaacgttttccacgtgtcgggcgagagc
ctgagcctggagctggtgcctcagcgcctgcgcggtgagattgcggtcatggatatccat
gacgaaaccggcaaggtgattgtcgagcaaggtcgtcgtattaccgctcgtcacatcaac
cagctggaaaaagccggcgtcaaacagctcgacgttcctatggaatacgtcctgggccgc
accaccgccaaggccatcgtgcacccggctaccggcgaaatcctggccgagtgcaacacc
gagctgaacaccgagctgctgatcaagatcgccaaggctcaggttgtccgcatcgagacc
ctgtacaccaacgacatcgattgcggtccgttcatctccgataccctgaagatcgactcc
accagcaatcagctggaagcgctggtcgaaatctaccggatgatgcgtcctggcgagccg
ccaaccaaggatgctgccgagaccctgttcaacaacctgttcttcagcgccgagcgttac
gacctgtcggccgttggtcgcatgaagttcaaccgtcgtatcggtcgcaccgaaatcgaa
ggttcgggcgtgctgagcaaggaagacatcgtcgaggtcctcaagaccctggtcgatatc
cgtaacggcaaaggcatcgtcgacgacatcgaccacctcggtaaccgtcgcgttcgttgc
gtcggcgagatggccgagaaccagttccgcgttggcctggtgcgtgttgagcgtgcggtc
aaagagcgtctgtcgatggcagaaagcgaaggcctgatgcctcaggacctgatcaacgcc
aagccggttgcggcggcggtgaaagagttcttcggctccagccagctctcgcagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgtcgtgtctccgcactcggccct
ggtggtctgacccgtgagcgtgcaggcttcgaagtccgtgacgtacacccgacccactac
ggccgtgtgtgcccgatcgagacccctgaaggtccgaacatcggtctgatcaactccctg
gcggcctatgcccgcaccaaccagtacggtttcctggaaagcccgtaccgtgtggttaaa
gagggtgttgtcaccgacgacatcgtgttcctgtcggcgatcgaagaagctgatcatgtc
atcgctcaggcttcggccgcgatgaacgagaagaagcaactgatcgacgagttggtagcc
gttcgtcacctgaacgaattcaccgtcaaggcgccggaagacgtcaccctgatggacgtt
tcgccgaaacaggtagtttcggttgcagcgtcgctgattccgttcctcgagcacgacgac
gccaaccgtgcgttgatgggttcgaacatgcagcgtcaggctgtaccaaccctgcgtgct
gacaagccgctggtcggtaccggcatggagcgtaacgttgcccgtgactccggcgtttgc
gtcgtggctcgtcgtggtggcgtgatcgattccgtcgatgccagccgtatcgtggttcgc
gttgccgatgacgaagttgaaaccggtgaagccggtgtcgacatctacaacctgaccaag
tacacccgttcgaaccagaacacctgcattaaccagcgtccgctggtgagcaaaggtgat
gtggttcagcgtagcgacatcatggccgacggcccgtccaccgatatgggtgaactggca
ctgggtcagaacatgcgtatcgcgttcatggcgtggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtggttcaggaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttggcccagaagagatcaccgcggacattccg
aacgtcggtgaagctgcgctgaacaagctggacgaagccggtatcgtttacgtgggtgct
gaagtaggcgctggcgacattctggtcggcaaggtcacgccaaaaggcgaaacccagctg
acgccagaagagaagctgctgcgcgcgatcttcggtgagaaggccagcgacgttaaagac
acttccctgcgcgtgcctaccggcaccaaaggtactgtcatcgacgtacaggtcttcacc
cgtgacggcgttgagcgtgacagccgtgcgctgtccatcgagaagatgcagctcgacgag
atccgcaaggacctgaacgaagagttccgtatcgttgaaggcgcaaccttcgagcgtctg
cgttctgccctgaacggccaggtcgtcgatggtggtgcaggcctgaagaaaggcactgtg
atcaccaacgaagtgctggacggtctggagcacggccagtggttcaagctgcgcatggcc
gaagacgcgctgaacgaacaactcgagaaggcccaggcctacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggca
ccgggcgtactgaagatcgtcaaggtctacctggcaatccgtcgccgcatccagccgggc
gacaagatggccggtcgtcacggtaacaagggtgtggtctcggtgatcatgccggtcgaa
gacatgccgcacgacgccaacggtacgccagttgacgtggtactcaacccattgggtgta
ccatcgcgtatgaacgttggtcagatcctcgaaacccacctgggcctggcggccaaaggt
ctgggcgagaagatcaaccgcatgctcgaagagcagcgcaaggtcattgaactgcgcaag
ttcctcaccgagatctacaacgagatcggtggtcgtcaggaaagcctggaagacttctcc
gaccaggaaatcctggatctggcgaagaacctcaaaggcggtgtgccaatggccactcca
gtcttcgacggcgccaaggaaagcgaaatcaaggccatgctgaaactggcagacatgcca
gaaagcggtcagatgcagctgttcgacggccgtaccggtaacaagttcgagcgtccagtg
accgttggttacatgtacatgctcaagctgaaccacttggtggacgacaagatgcacgcg
cgttccactggttcttacagcctggttacccagcagccgctgggtggtaaggcgcagttc
ggtggtcagcgtttcggggagatggaagtgtgggcgctggaagcatacggcgcggcatac
accctgcaagaaatgctcacagtgaagtcggacgacgtgaacggtcggaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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