KEGG   Pseudoalteromonas aliena: B0W48_18860
Entry
B0W48_18860       CDS       T04815                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
paln  Pseudoalteromonas aliena
Pathway
paln03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:paln00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    B0W48_18860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:paln03400]
    B0W48_18860
Enzymes [BR:paln01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     B0W48_18860
DNA repair and recombination proteins [BR:paln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      B0W48_18860
SSDB
Motif
Pfam: TRCF DEAD UvrB_inter Helicase_C CarD_TRCF_RID MFD_D3 ResIII SNF2-rel_dom UB2H ERCC3_RAD25_C Glyco_tran_WecG RecG_dom3_C
Other DBs
NCBI-ProteinID: AQQ01662
UniProt: A0A1Q2H2U3
Position
4249118..4252591
AA seq 1157 aa
MAFEQWAALPWVKSHKDKIQWGQLSGSGLSIAIAEGVKQQDNLVLIVTPDTPSALRLETE
LEYLLPDNPVMVFPDWETLPYDHFSPHQDIISARLATLNTLKKEQQSVLIVPVSTLMLRT
APASFIYGSTINFKVGDKLDTHNFRDNLEQAGYLNVQQVMEHGEYAIRGSIVDLYPMGSP
HPFRLDFFDDELDTIRLFDVETQRSDEKVDKIELLPAHEFPTNDADIERFRISYREKFGA
SSQQDSVYMQVSKGNWPAGIEYYMPLFFEKLATIFDYLPDTTTVMQLGDLEHAADNFWHD
VNVRYENRRVDPLRPLLEPNALYQPIEELFSNLGNFARIRLSLAKLGTKAGNKNLSVGEL
PAIRIDHKQHEPYGAFINYVAEQKKKKGRILLSVESDGRRESLLSILKPSGLKFKEFETL
EQFIKSASDVGLIVSPLEQSVVLGTKPSLSIITEQELLGIKVSQRRRRKHKYEASQDALI
RNLAELKEGQPVVHLDHGVGRYQGLQTIDAAGVITEFVTITYASEAKLYVPVSALHMLSR
YSGGEEASAPLHKLGSDAWEKAKKRAAEKVRDVAAELLDIYAQRQAKPGNKFTLDAPAYR
QFSDSFPFEETDDQRNAIEAVLGDMQSKQAMDRLVCGDVGFGKTEVAMRAAFVAVNDDKQ
VAILVPTTLLAQQHYENFKDRFADFPIEVGVLSRFNSTKEQKDTLEKMANGKLDIVIGTH
KLIQQDIKFHDLGLLIVDEEHRFGVRQKEKIKALRADVDILTLTATPIPRTLNMAMSGMR
DLSIIATPPAKRLAVKTFVRQRDVELIREAVLREIKRGGQVYFLHNNVETIDRVAQEISE
WVPEASVTSAHGQMREQELEQIMTDFYHQKYNVLVCTTIIETGIDVPTANTIIMDRADKL
GLAQLHQLRGRVGRSHHQAYAYLLTGDPKALSKDASKRLQAIESLEDLGAGFALATHDLE
IRGAGELLGDDQSGQMQTIGFSLYMEMLEQAVNALREGKEPTLENLLKKQTEVDLKLAAL
LPDDYIHDVNARLGMYKRVASCANLDDMDELQVELIDRFGLLPDAAKNLFSLQQLKMQAS
NLGITKIEANPKGGYFEFSQDTKVNPSFIIGLIQSAPKVYKMDGANKLRFAISEANARER
LKMVTAMIADFEKKVSH
NT seq 3474 nt   +upstreamnt  +downstreamnt
atggcgtttgagcaatgggcagccttgccttgggtaaaatctcataaagataaaattcaa
tggggccagctaagcggaagtggtttaagtattgccattgctgaaggcgttaaacaacaa
gacaacttagtcttaattgttacgcctgatacaccaagcgcactgcgccttgaaacagag
ttagaatatctattacccgataatccggtaatggtatttcctgattgggaaactctgcca
tacgatcatttctctccccatcaagatattatttcagcccgtttagccactttaaacacc
ttaaaaaaagaacaacaaagtgtgttaattgtgcccgtatctactttaatgttgcgcact
gcacccgcctcgtttatttacggctcaacaataaattttaaagtcggcgacaagctagac
acacataactttcgtgacaacttagagcaagctggttatttaaatgttcaacaagtaatg
gagcacggcgaatacgctatacgtggctctattgttgatttgtaccctatgggtagcccg
cacccatttagactcgacttttttgatgacgaactcgacactattcgtttgtttgatgta
gaaacgcagcgctctgatgaaaaagtagataaaattgagctacttccagcacatgagttt
ccaactaacgacgctgatattgaacgttttagaataagctaccgtgaaaaatttggcgca
agttcgcagcaagattctgtatacatgcaagtgagtaaaggtaactggcctgcgggtatt
gaatactacatgccgttgttttttgaaaaactagcgactatttttgactatctgccagat
acgacaactgttatgcaactaggtgatttagagcatgcggcagataacttttggcacgat
gtaaatgtacgttatgaaaaccgcagagttgacccacttcgtccattactagagcctaat
gcgctttatcagcctattgaagagttgttttctaatttaggaaattttgcacgtattcgc
ttatcgcttgcaaagcttggcactaaagcaggtaataaaaacttaagtgttggcgagctg
ccagccattcgaattgatcataaacagcatgaaccttatggcgcgtttataaattatgta
gcagagcaaaaaaagaaaaaaggccgcatattactcagtgttgaatcggacggtcgtcgt
gaatcattactgagcattctaaaaccaagcggtttaaaatttaaagaattcgaaacactc
gaacaatttataaaaagtgcaagtgatgtaggtttaatagtaagcccgcttgagcaaagt
gtggtacttggcactaaaccaagcctatcaattattaccgagcaagaactgctgggtatt
aaagtatctcagcgcagacgccgcaaacataaatacgaagccagccaagatgcgctaatc
cgtaacttagctgagcttaaggaaggccaacctgttgtgcatctcgatcacggtgttggg
cgttaccaaggtttacaaacaattgatgccgcaggtgtaattactgagtttgttacgatt
acttacgcaagtgaagctaaattgtacgtgccggtgtctgcattgcatatgcttagtcgt
tactctggcggtgaagaagctagtgccccgctgcataagcttggctcagatgcatgggaa
aaagcaaaaaaacgtgcggctgaaaaagtacgcgatgtcgccgccgaattacttgatatt
tatgctcagcgccaagcaaagcctggtaataaatttaccctagatgcccctgcatatcgt
caatttagcgatagcttcccgtttgaagaaactgacgatcagcgcaacgccatagaagcg
gttttaggtgatatgcaatcaaaacaagcgatggatcgtttagtgtgtggtgacgtaggc
tttggtaaaacagaagtggccatgcgcgctgcttttgtagcggttaacgatgataaacaa
gtggcaattttagtgcctaccaccttactggctcagcagcactatgaaaactttaaagac
cgttttgctgattttcctattgaagttggtgtgctttcgcgctttaactccactaaagag
caaaaagacacgcttgagaaaatggccaacggtaagctcgatatagttattggcacacat
aaacttattcagcaagacattaaatttcacgatttaggcttacttattgttgacgaagaa
catcgctttggggtgcgtcaaaaagagaaaattaaagccctgcgtgcagatgtagacata
cttacactaactgcaacgccaataccacgtacactcaacatggccatgagcggcatgcgc
gatttatcaattatcgcaacgccaccggctaaacgtttagcggtaaaaacctttgtacgc
caacgcgatgtagaactaatacgcgaagcggtactgcgtgaaattaaacgcggtggccaa
gtttactttttacataacaacgtagaaacgattgaccgtgttgcacaagaaattagtgaa
tgggtgccggaagcgagtgtaacctcagcccatggtcaaatgcgcgagcaagagcttgag
caaataatgactgacttttatcatcaaaaatacaacgtactggtgtgtacaacgattatc
gaaacgggtatcgatgtaccgacagccaataccattattatggatagagcagataaactc
ggcttagcgcagctacatcaattacgtgggcgagttggtcgaagccaccatcaagcgtat
gcctacttactaacaggtgaccctaaagcgctttctaaagatgcgagtaaacgcttacaa
gcaatcgaatcgttagaggatttaggtgcaggttttgccctggcgacacatgatttagaa
attcgtggcgcgggtgagttgcttggcgatgatcaatcaggtcaaatgcaaacaatcggc
tttagtttgtatatggaaatgcttgaacaagcagtaaatgcgctacgcgaaggtaaagaa
ccaacacttgaaaatctactaaaaaaacaaaccgaagtagatttaaaactagctgcatta
ttacctgacgactacatacacgatgttaatgcacgattaggtatgtacaagcgcgttgct
agttgtgctaaccttgacgatatggatgagttacaggtagagctaatagaccgctttggt
ttattacccgatgccgctaaaaacttatttagcttacaacagcttaaaatgcaggccagc
aatttagggataacaaaaattgaagctaaccctaaaggcggttactttgagttcagccaa
gatactaaggttaaccctagcttcatcattggtttgatacaaagtgcacctaaggtgtac
aaaatggatggcgcaaataaactgcgctttgcaattagtgaggcaaatgcccgcgaacgc
ttaaaaatggtcactgcaatgattgcagatttcgaaaaaaaggttagccattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (22)   

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