KEGG   Paracoccus aminophilus: JCM7686_0328
Entry
JCM7686_0328      CDS       T02792                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
pami  Paracoccus aminophilus
Pathway
pami03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pami00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JCM7686_0328
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pami03019]
    JCM7686_0328
   03400 DNA repair and recombination proteins [BR:pami03400]
    JCM7686_0328
Enzymes [BR:pami01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     JCM7686_0328
Messenger RNA biogenesis [BR:pami03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     JCM7686_0328
DNA repair and recombination proteins [BR:pami03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      JCM7686_0328
SSDB
Motif
Pfam: RQC DEAD HRDC Helicase_C RecQ_Zn_bind
Other DBs
NCBI-ProteinID: AGT07437
UniProt: S5XQU2
Position
277153..279174
AA seq 673 aa
MSAAPLLRQVFGFDGFRPGQEEIVEAVAAGRDVLAIMPTGGGKSLCYQLPALMRDGVTVV
ISPLIALIRDQVRALREAGVAAGALTSGNTEEETAAVFEGLRAGELKLLYMAPERLASSG
TLPMLRRAGVTAIAVDEAHCVSQWGHDFRPDYLRIGELRATLNVPLAAFTATADVETRGE
IMRRLFPEAAPLSFLRGFDRPNIHLAFAPKDGPRRQILDFARARDGQSGIVYCGTRAKTE
TLAQALLDAGLPAVAYHGGMEAGPRREVEGRFQREDGLIVVATVAFGMGIDKPDIRWVAH
ADLPRSIEAYYQEIGRAGRDGGPAETMTLYGQEDIRLRRSQIDEGQAPLERKTADHARLN
ALLGLAEAATCRRQYLLGYFGEEAGPCGHCDICNDPPETFDGTEPVRKALSAVLRTGETY
GAGHIIDVLIGNATEKVTQRGHDRLPTFGCGKDIGKLAWQAILRQMLGRDLLRPDPERHG
GLVITEAAHPVLRGEIPVILRRDLIAKARPAPVVRAQVSDEDAQLFAALRAKRRELAEAQ
GAPAYVIFADKTLIEMAATRPMTLDQMARVSGVGAKKLESYGRDFLAVIAGEVPAMHPAR
RALAGSAAGELFDRLLEAQNRLLRGTDGTEKPLSVSTSVLRRIAEDRPRDLARYLDPARF
DRFGEAFAEEIAA
NT seq 2022 nt   +upstreamnt  +downstreamnt
atgtcggccgccccccttctgcggcaggtcttcggctttgacggtttccgccccggacag
gaggaaatcgtcgaggcggtggccgctggtcgcgatgttttggcaatcatgccgacgggt
ggcgggaaatctctgtgttatcaactgcctgcgctgatgcgcgatggcgtgaccgtggtc
atctcgccgctgatcgcgctgatccgcgatcaggtccgggctttgcgcgaggccggggtg
gcggctggcgcgctgacctcgggcaataccgaggaagagaccgcggcggtcttcgagggc
ctgcgcgcgggtgagctgaaactgctttatatggcgcccgaacggctggcctccagcggg
acgctgccgatgctgcgccgggcgggggtcactgcaatcgccgtcgacgaggcgcattgc
gtcagccaatggggccatgatttccgccccgattacctgcgcatcggcgagctgcgcgcg
acgctgaacgtgccgctcgcggccttcaccgcgaccgccgatgtcgagacccggggcgag
atcatgcgccgcctctttcccgaggccgcgccgctcagctttctgcgcggctttgatcgc
ccgaacatccaccttgccttcgcgcccaaggacgggccgcgccgccagatcctcgatttc
gcccgcgcccgagacggccagtcgggcatcgtctattgcggcacccgcgccaagaccgag
accctggcgcaggcgctgctcgatgcgggccttccggcggttgcctatcacggcggcatg
gaggccgggccgcgccgcgaggtcgagggccgcttccagcgcgaggatgggctgatcgtc
gtcgcgaccgtggcctttggcatgggcatcgacaagccggacattcgctgggtcgcccat
gccgatctgccgcgctcgatcgaggcctattatcaggaaatcggccgcgccgggcgcgat
ggcggtccggcggaaaccatgacgctttacgggcaggaagacatccgcctgcgccgcagc
cagatcgacgaggggcaggcgccgctggagcgcaagaccgccgatcacgcgcggctgaat
gcgcttctggggctggccgaggcggcgacctgtcggcgccagtatctcttgggctatttc
ggcgaagaggccgggccctgcggccattgcgatatttgcaacgacccgcccgagaccttc
gacgggaccgagccggtccgcaaggcgctctcggccgtgctccgcaccggcgagacttat
ggcgcgggtcatatcatcgacgtgctgatcggcaatgccaccgaaaaggtcacccagcgc
ggccatgaccgcctgccgaccttcggctgcggcaaggatatcggtaagctcgcctggcag
gcgatcctgcgccagatgctcggtcgcgatctgctgcgtcccgatcccgaacgtcacggc
ggtctggtgatcaccgaggccgcccatccggtgctgcgcggcgagatcccggtgatcctg
cgccgcgatctgatcgccaaggcgcgacctgcgccggtggtgcgcgcgcaggtctcggat
gaggatgcgcagctctttgccgccctgcgcgccaagaggcgcgagctagccgaggcgcag
ggcgcgcccgcctatgtcattttcgccgacaagaccctgatcgaaatggccgcgacccgg
ccgatgacgctcgatcagatggcacgggtcagcggggtcggcgcgaagaagctggaaagc
tatggccgcgattttctggcggtgatcgcaggcgaggttccggcgatgcatccggcgcgc
cgggcgctggcgggcagtgcggcgggtgagctgttcgaccgcctgcttgaggcacaaaac
cgtctgctgcgcggcacggatgggacggaaaagccgctctcggtctcgacttcggtgcta
cgccgcatcgccgaggaccggccccgcgatctcgcgcgttatctcgaccccgcgcgcttt
gaccgcttcggcgaggctttcgccgaagagatcgcagcttag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (16)   

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