KEGG   Planococcus antarcticus: BBH88_13765
Entry
BBH88_13765       CDS       T04428                                 
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
  KO
K07462  single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pana  Planococcus antarcticus
Pathway
pana03410  Base excision repair
pana03430  Mismatch repair
pana03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:pana00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BBH88_13765
   03430 Mismatch repair
    BBH88_13765
   03440 Homologous recombination
    BBH88_13765
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pana03400]
    BBH88_13765
DNA repair and recombination proteins [BR:pana03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    RecJ
     BBH88_13765
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecFOR pathway proteins
     BBH88_13765
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      BBH88_13765
SSDB
Motif
Pfam: ssDNA-exonuc_C RecJ_OB DHHA1 DHH
Other DBs
NCBI-ProteinID: ANU11285
UniProt: A0A1C7DIJ5
Position
1540844..1542847
AA seq 667 aa
MIPNRFKHGYGPNSELFQQAFDNGTKLIVTVDNGISGMEQVDFANSLGMDVIISDHHDIG
DQLPNALAVVHPRHPEGNYPFGELAGVGVAFKMAHALYEEIPDHLIELTAIGTVADLVPL
HGENRLFVKEGLAALIDSPSPAISALCEVAGIKQQDITEETIGFMFGPRINAIGRLQDAD
PAVQMFLTEDPTEARSLASGLDVLNKERQAIVKQISEEAMQQVEQRYPNGVPRVIVVAQE
GWNPGVVGIVASKLTEKFYRPSIVLSLNPETGKAKGSARSIEGFHLYNELAKNRDILPHF
GGHPMAAGMTLEASVVDDLRERLNKQAETSLSEEDLLPVIEIDIPLRLDEIDITAIESMR
LLAPFGMGFAKPKFYLEGVKVASIRKIGAAQNHLKMELTQHVGSLDAVGFGLGPIGDELT
PDVKIDVIGDLQINEWNGRKKPQLMVEDVRTDQWQLFDIRGIRQVSRWSKLIPQENQVFL
AFNEDTPALFQSFLSQSICTVAQLDNVPGNKDHLVLLDLPESEEQLAAVLAKLKPKRIYA
HFHAKDSQYFEQIPTREQFKWLFAFIKKRGSFDFNKHCDELAKHKGWRRESIFFMLQVFF
ELGFVTLNNGITEIAQSPSKQDLSEAPIYKKREQQIALEQKLLYASYKDLKEWFDAKVSA
KEEEIWI
NT seq 2004 nt   +upstreamnt  +downstreamnt
atgataccgaaccgctttaagcacggatacggaccgaatagcgaactgtttcagcaggca
ttcgataacggaaccaaactaattgtaactgttgataacggcatttctggcatggaacaa
gtcgattttgccaacagtttaggaatggatgtcatcatcagtgatcatcacgatatcggt
gatcagttgccaaatgcgttagcggttgttcatccgcgtcatccagaagggaattatcct
ttcggtgaacttgccggagtgggtgtagcgtttaaaatggcgcatgctttgtacgaagaa
attccggatcacttgattgaactgacagcgatcggcactgttgccgatctcgtcccgctc
cacggcgaaaaccggctgtttgttaaagaaggtctggctgcgctaatcgattcgccgagt
ccagcaatctcggcattatgcgaagtggcaggtatcaaacagcaagacattacggaagag
accatcggctttatgtttggcccacgtattaatgcaatcggccgtttgcaagacgccgat
cctgctgtccagatgttcttaacagaagacccaacagaagcacgttcactagcttcagga
cttgatgttttaaataaagagcggcaagcgatcgtcaagcagatttcagaagaagcgatg
cagcaagtggagcagcgctatccaaacggtgtgccgcgcgtgattgtggtggcccaggaa
ggctggaatcctggagttgtcggcatcgtcgcatcaaaactgacagagaaattttatcgt
ccatcgatcgtgctgtcgctgaaccctgaaaccggcaaagcgaagggctctgcccgcagc
attgagggatttcatttgtataacgagctggccaagaaccgggacattttgcctcatttc
ggcggacatccaatggcagccggcatgacgcttgaggcgtctgttgtggatgatttacgc
gaacggctcaataagcaagcggaaaccagcttgtctgaagaggacctgttgccggtcatt
gaaatcgacatcccgctccgtctagatgaaattgatatcacagccatcgaatcgatgcgg
ttgctggcgccttttggtatgggttttgccaaaccaaagttttatcttgagggtgtaaaa
gtggcatctattcgtaaaatcggagcagcacaaaaccacttgaaaatggagttgacgcag
catgtcggatctttggatgctgttggcttcggactcggcccaatcggagatgagttgacg
ccggacgtcaaaatcgacgtcatcggagatttgcagatcaatgaatggaacggtcggaaa
aaaccgcaattgatggtggaggatgtccgtacggatcaatggcaattatttgatatccgt
ggcattcgccaagtgtcgcgctggtcgaagctgattcctcaagaaaaccaggtcttcttg
gcttttaacgaggatacaccggctttattccagtcattcctgtcgcagtcgatctgcaca
gttgctcagttggataacgtgccaggaaataaagatcatcttgttctgctggacctgccg
gaatcggaagagcaattagcagccgtgctggcgaaattgaagcccaagcggatctatgcc
catttccatgccaaggattcgcagtattttgagcagattccgacgcgtgaacagtttaaa
tggttgttcgctttcatcaagaaacgtggatctttcgatttcaataaacattgcgacgaa
ctggcaaaacacaaaggctggaggcgtgaatcaatctttttcatgctgcaggtgtttttt
gaactcggttttgttacacttaacaatggcattaccgagattgcacaatcgccgagcaaa
caggatttgtcggaagcgccgatttacaagaagcgcgagcagcagattgccctagagcaa
aagcttttgtatgcatcttataaagatttaaaagagtggttcgatgcgaaagtgtctgcc
aaggaggaagaaatatggatttga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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