KEGG   Pantoea sp. PSNIH1: PSNIH1_06670
Entry
PSNIH1_06670      CDS       T03464                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
pant  Pantoea sp. PSNIH1
Pathway
pant03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:pant00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PSNIH1_06670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pant03021]
    PSNIH1_06670
   03400 DNA repair and recombination proteins [BR:pant03400]
    PSNIH1_06670
Enzymes [BR:pant01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     PSNIH1_06670
Transcription machinery [BR:pant03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     PSNIH1_06670
DNA repair and recombination proteins [BR:pant03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      PSNIH1_06670
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AIX49936
Position
1374708..1378931
AA seq 1407 aa
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLEKRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDKVNAKGEGMVLTGPKEAERVYRAG
LAELHARVKVRITEYAKNEQEELVAKTSLIDTTIGRAILWMIVPKGLPYSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPAKKAEIIAEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVSKAMMDNLQTETVINRNGEEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFEGIMMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILIPRNTLIDEHWCDVVEENSVDVIKVRSVVSCETDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIKL
TNAKSVTNSSGKLVIVSRNVELKMIDEFGRTKESYKVPYGAVMAKGDGEQVAAGETVANW
DPHTMPVITEVGGFIRFTDMIDGQTITRQTDDLTGLSSLVVLDSAERTAGGKDLRPALKI
VDANGNDVLIPGTDMPAQYFLPGKAIVQLEDGVKISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPESPHDILRLRGVHAVTRYITNEVQEVYRLQGVKINDKHIEVIVRQM
LRKATIMSAGSSEFLEGEQAEVSRIKISNRDLETAGKIGATYARDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRQAGEAPV
APQVTADEASASLAELLNAGLGGNNDE
NT seq 4224 nt   +upstreamnt  +downstreamnt
gtgaaagacttacttaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcctggtcttttggtgaagttaaaaag
ccggaaaccattaactaccgtaccttcaagccagagcgtgacggtcttttctgtgcccgt
atcttcggaccggttaaagactacgagtgcctgtgcggtaagtacaagcgcctgaagcat
cgcggtgttatctgcgagaagtgcggcgttgaagtgacgcagaccaaagtacgccgtgag
cgtatgggtcacatcgagctggcttcacctactgcacacatctggttcctgaagtcgctg
ccgtcccgcatcggcctgctgctggatatgccactgcgtgacattgagcgtgtcctctac
ttcgaatcctacgtggttatcgaaggcggcatgaccaacctggaaaaacgtcagatcctg
acggaagagcagtatcttgacgcgctggaagagttcggtgacgaatttgacgcgaagatg
ggtgcggaagcgatccaggcactgctgaaaaatatggatctggagcaggagtgtgagcag
ctgcgcgaagagctgaacgagactaactctgagaccaagcgtaaaaagctgaccaagcgt
atcaagctgctggaagcgttcgtgcagtctggcaacaagccagagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggtaccgctggatggtggtcgtttc
gctacgtcagatctgaacgatctctatcgtcgcgtgatcaaccgtaataaccgtctgaag
cgtctgctggatttggctgcgccagatatcatcgtgcgtaacgaaaagcgtatgctgcag
gaagcggtagatgccctgctggataacggccgtcgcggtcgtgccatcaccggctctaac
aagcgtccgctgaaatcgctggctgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctgggtaaacgcgttgactactccggtcgttcggttatcaccgtgggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggagctgcgtggtcttgctaccaccatcaaagctgccaagaaaatg
gttgagcgtgaagaagcggttgtctgggatatcctggacgaagttatccgcgaacacccg
gtgctgctgaaccgtgcgccaacgctgcaccgtctcggtatccaggcgtttgaaccggtt
ctgatcgaaggtaaagcgatccagctgcacccgctggtctgtgcggcctataacgccgac
ttcgatggtgaccagatggcggtacacgtaccgctgacgctggaagctcagctggaagcg
cgtgcgctgatgatgtcgaccaacaacattctgtcgccagcgaacggtgagccaatcatc
gttccttcacaggacgttgttctgggtctgtactatatgacccgcgacaaagtaaacgcc
aaaggcgaaggcatggtgctgaccggcccgaaagaagctgagcgtgtttaccgcgctggc
ctggctgagctgcacgcccgcgttaaagtgcgtattacagaatatgcgaaaaacgaacag
gaagagctcgttgcgaaaaccagcctgatcgacacgaccattggccgtgcgattctgtgg
atgatcgtaccgaaaggtctgccttactccatcgtcaaccaggcgctgggtaagaaagcg
atctccaaaatgctgaacacctgttaccgcattctgggcctgaagccgaccgttatcttt
gctgaccagaccatgtacaccggtttcgcctatgcagcccgttcaggtgcatcagtcggt
atcgacgatatggttattccggcgaagaaagcggaaatcatcgctgaagctgaagctgaa
gtggctgaaattcaggagcagttccagtctggtctggttacggcgggtgaacgttataac
aaagtcatcgatatctgggccgctgccaacgaacgcgtctctaaagcgatgatggataac
ctgcagacggaaaccgttatcaaccgtaacggcgaagaagagcagcaggtctcgttcaac
agcatctacatgatggccgactccggtgcgcgtggttctgcagcacagattcgtcagctg
gcaggtatgcgtggtctgatggcgaagccagatggctccatcatcgagacgcctatcacg
gcaaacttccgtgaaggcctgaacgtactgcagtacttcatctcaacgcacggtgcgcgt
aaaggtctggccgataccgcactgaaaacggcaaactccggttatctgacccgtcgtctg
gttgacgtggcgcaggatctggttgttaccgaagatgactgtggcacgttcgaaggcatc
atgatgacgccggttatcgaaggtggcgacgttaaagagccgctgcgtgagcgcgtactg
ggtcgtgtaacggctgaagacgttctgaagccaggcactgctgacatcctgatcccgcgt
aatacgctgatcgatgagcactggtgtgacgtggtggaagagaactccgttgacgttatc
aaagtgcgttcagtagtaagctgtgaaaccgacttcggtgtgtgtgcacactgctacggt
cgcgatctggctcgtggtcacatcatcaacaaaggtgaggccatcggcgttatcgcagca
cagtccatcggtgagccgggtactcagctgacaatgcgtacgttccacatcggtggtgcg
gcatcgcgtgcggctgctgaatccagcattcaggtgaagaacaaaggtactatcaagctg
accaacgcgaagtcagtaaccaactcctccgggaagctggttatcgtttcacgtaacgtt
gagctgaagatgatcgacgagttcggtcgtaccaaagagagctataaagtgccttacggt
gcggtgatggcgaaaggtgatggtgagcaggttgctgcaggcgaaaccgtagcaaactgg
gatccgcacaccatgccggtaatcaccgaagtgggtggtttcatccgcttcaccgacatg
atcgacggtcagaccattacccgtcagactgacgaccttaccggtctgtcatcgctggtg
gtactggattccgcagagcgtactgctggcggtaaagacctgcgtccggcgctgaaaatt
gttgatgccaacggcaacgacgttctgatcccgggcaccgacatgccggctcagtacttc
ctgccaggtaaagcgattgtgcagctggaagatggcgtgaagatcagttcgggtgatacc
ctggcgcgtgttccgcaggaatctggcggtaccaaggacattaccggtggtctgccgcgc
gttgcggatctgttcgaagcgcgtcgtccgaaagagccagctattctggcggagatcagc
ggtatcatctccttcggtaaagagaccaaaggcaagcgtcgtctggtgatcacaccggtt
gatggcagcgatccgtacgaagagatgattccaaagtggcgtcagcttaacgtatttgaa
ggtgagcgcgtggaacgcggtgacgtcgtatctgacggcccggaatcaccacacgacatc
ctgcgtctgcgtggcgttcatgcggtaacgcgttatatcactaacgaagtgcaggaagtt
taccgcctgcagggcgttaagattaacgataagcacatcgaagtcatcgtacgtcagatg
ctgcgtaaagcgaccatcatgagcgcaggtagctcggagttccttgaaggcgagcaggca
gaagtctcccgcatcaagatctccaaccgcgatctggagaccgctggcaaaatcggcgca
acctatgcgcgcgatctgctgggtattaccaaagcgtctctggcaaccgagtcgttcatc
tctgcagcctcgttccaggagaccacgcgtgtcctgaccgaagccgcagtagcaggcaag
cgcgatgaactgcgcggcctgaaagagaacgttattgtgggtcgtctgatcccggctggt
accggttatgcttaccatcaggatcgtatgcgtcgccgtcaggcgggtgaagcgccggtt
gcaccgcaggtgactgcggatgaagcctctgcaagcctggctgagctgctgaacgctggt
ctgggtggcaacaacgacgagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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