KEGG   Psychrobacter arcticus: Psyc_1886
Entry
Psyc_1886         CDS       T00256                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
par  Psychrobacter arcticus
Pathway
par03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:par00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Psyc_1886 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:par03021]
    Psyc_1886 (rpoC)
   03400 DNA repair and recombination proteins [BR:par03400]
    Psyc_1886 (rpoC)
Enzymes [BR:par01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Psyc_1886 (rpoC)
Transcription machinery [BR:par03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Psyc_1886 (rpoC)
DNA repair and recombination proteins [BR:par03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Psyc_1886 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: AAZ19734
UniProt: Q4FQH4
Position
complement(2324839..2329059)
AA seq 1406 aa
MKDLLDIMQSPTSNGNHEFDSIQITLASPDVIKSWSHGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDFECLCGKYKRRKFQGVICEKCGVEVTTAKVRRDRMGHIDLASPVAHIWFLK
SLPSRIGLLLDMTLRDIERVLYFESYIVTEPGLTSLEKYQLLDDEDYYKALEEFGDEFTA
KMGAEAVQDLLKDIDLDLEIDELREAIPQTGSETKLKKMSKRLKLLEAFRNSNNKPEWMV
MNILPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLELSAPDIIVRNEKRM
LQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVG
PTLRLHQCGLPKKMALELFKPFTYNKLLSHGLATTIKAAKKMVEREEPQVWDMLAMVIRE
HPVLLNRAPTLHRLGLQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLTLEAQL
ESRALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRSSVNAKGEGMIFATVNEALRAIG
SNDLHVNAKIKVRVTETHIDDDGNRTKETSIKDTVAGRLLIWNIMPVGMSFDECNEEMTK
KNISKLINSCYRKVGVKESVMFADQLMYLGFAQATLSGVSIGIDDMVIPPLKKQIIEVAE
AEVREIEDQFEQGFVTAGERYNKVVDIWSRTNDKVAKAMMDNLATDKIINAKGEEEEQKS
FNSIFIMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVAQDLVITSDDCGTEQGLLMKPHIQGGEIIEKLGEL
VLGRVTARDVTYNDDAEKILIPAGTLIDEHWVKVLDNNAIDDIWARSVITCEIEHGVCSQ
CYGRDLARGHKVNIGESVGVMAAQSIGEPGTQLTMRTFHVGGAASSASVDNSISVRSAGQ
AHFENMKTVQHTDGHLVIVSRSAEIALTDELGRERERYKVPYGSSVLIKDEEQVEGGQTI
AKWDPHTHPIITEFAGTARFSEITDGLTATVKVDDATGMSSFEILATRDRSSSAKDLRPA
IILNTDEGKEVIYFLPAETIIRVSDGEKVAAGSILGRVPQASSGTKDITGGLPRVADLFE
ARRPKDHAIMAEMSGVVSFGKETKGKNRFIITNEDGEIHEELIPKWRQINVFENETVARG
EVIADGPQNPHDILRLKGQTALADYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEIT
DGGDSNHFKGDQVEYADIKALNAKLEAEDKFPVQFERQLLGITKASLATESFISAASFQE
TTRVLTAAAVTGKVDELRGLKENVVVGRLIPAGTGLAYHKARKEKAEQKLQDKDLNAAFD
MSATTDSKDFASFDEAFAQELNQGNH
NT seq 4221 nt   +upstreamnt  +downstreamnt
ttgaaagatttactcgatatcatgcaaagccctaccagcaatggtaaccatgagtttgat
agcatccaaattaccttggcatcgcctgacgttattaagtcgtggtcgcatggtgaagta
aaaaaacctgaaaccattaactatcgtacgttcaaacctgaacgtgatggtcttttttgt
gccaaaatttttggtccagtaaaagattttgaatgtttatgtggtaaatataagcgccgt
aaattccaaggcgttatatgcgaaaaatgtggcgttgaagttaccacggctaaagttcgc
cgcgatcgcatgggtcatattgacctagcgagccctgttgcgcatatttggttcttaaaa
tcattaccaagccgcatcggtctattgctagatatgacgcttcgtgatatcgaacgcgta
ttgtattttgaaagctatatcgtgactgagccagggttgacttctttagagaagtatcaa
ctgcttgatgatgaagattattataaagcgcttgaagaattcggtgatgaattcacggcc
aagatgggtgctgaagcggttcaagaccttttaaaagatatcgacttagatttagagatt
gatgagttacgtgaagcgattccgcaaactggttctgaaaccaagcttaaaaagatgtct
aagcgtcttaaattattagaagctttccgtaattctaataataagcctgagtggatggta
atgaatatcttaccagtactaccaccagatttgcgtcctctagtaccacttgaaggcggt
cgttttgcgacatcagatcttaacgatttatatcgccgcgttattaaccgtaataatcgt
ctaaagcgtctgcttgagctaagcgctcctgatatcatcgtacgtaacgaaaaacgtatg
ttgcaagaatcagtagatgcattgttagacaacggtcgccgcggtcgtgcgattactggt
agtaacaagcgtccattgaaatctttggctgatatgatcaaaggtaagcaaggtcgtttc
cgtcaaaacttactaggtaaacgtgttgattattctggtcgttcggtgatcgttgttggt
ccaaccttacgtctacatcagtgtggtctaccgaagaaaatggcacttgaattgttcaag
ccatttacatataacaaattattgtctcatggcttggcgacgacgattaaagctgccaaa
aaaatggtagagcgtgaagagccacaagtgtgggatatgctggccatggttatccgtgag
catccagtgctgcttaaccgtgcgccaacgcttcaccgtttgggtctacaagcatttgag
ccagtactaatcgaaggtaaagcgattcagcttcaccctctagtttgtaccgcattcaac
gctgactttgatggtgaccaaatggcggtacacgtgccattgacactagaagcacagctt
gaatcacgtgcacttatgatgtcgaccaacaatatcttgtctcctgctaacggtgagcca
atcatcgtaccatcacaagatgtggtattgggcttgtattacatcagccgctcgtcagtg
aatgccaaaggcgagggcatgatttttgccaccgttaatgaagcattgcgtgcgattggt
tcaaacgatttacatgttaacgccaagattaaagtgcgtgtgactgaaacgcatattgat
gatgacggcaatcgtactaaagagacgagtatcaaagataccgttgctggtcgcttgtta
atctggaacatcatgcctgttggtatgtcgtttgatgaatgtaatgaagagatgacgaag
aagaatatctctaaattgatcaactcttgctaccgtaaagtgggtgttaaagaaagtgtt
atgtttgctgaccaattgatgtatcttggttttgcacaagcaacactgtctggtgtgtct
atcggtatcgatgacatggtcattccaccactgaaaaagcaaatcatcgaagtggcagaa
gcagaagtgcgcgagattgaagatcaatttgagcaaggctttgtaacggctggtgagcgt
tataataaagtggttgatatctggtcacgtaccaatgacaaagtcgccaaagcgatgatg
gacaacttagcgactgataaaattatcaacgctaagggtgaagaagaagagcagaagtca
tttaactctatctttatcatgtcagattctggtgctcgtggtagtgccgcacagattcgt
cagctcgctggtatgcgtggtttgatggctaagccagatggctcaatcattgagacaccg
attaaggctaacttccgtgaaggtttgaccgtactgcagtactttatctcaacgcatggt
gcgcgtaaaggtcttgcggatacggcactaaaaaccgctaactcaggttacttgacgcgt
cgtttggttgacgtggcacaagatttggttattaccagtgatgattgtggtactgagcaa
ggcttgctcatgaagccacatattcaaggcggtgaaatcattgagaagttgggcgagcta
gtactaggtcgtgtaacggcacgtgatgttacttataacgatgatgctgaaaaaatcttg
attccagctggtactttaatcgatgagcattgggttaaggtgctagacaataacgcaatc
gatgatatttgggcacgttcagtgattacctgtgagatcgaacatggtgtttgttcacag
tgttatggtcgtgaccttgctcgtggtcataaagtgaatatcggcgagtcagtcggtgtt
atggcagcgcagtctatcggtgagcctggtactcagttgaccatgcgtactttccacgtt
ggtggcgcagcaagttctgcttctgtggacaacagcatttcagttcgtagtgctggtcaa
gcgcattttgaaaacatgaaaactgtacagcacactgatggtcacttggttatcgtatca
cgttcagctgaaatcgccttgaccgatgaacttggtcgtgagcgtgagcgttataaagta
ccttatggttcaagcgtcctcataaaagacgaagagcaggttgaaggcggtcaaaccatc
gctaagtgggatccacacacgcatcctattatcacagaattcgcgggtacagcacgtttc
agtgaaatcactgatggcttaactgctacagtaaaagttgatgacgcgactggtatgagc
tcgtttgagattctagcgactcgtgaccgttcaagctcagcaaaagacttgcgtcctgcg
attatcttgaacaccgacgaaggtaaagaagtgatttacttcttacccgctgaaaccatc
attcgcgtcagcgacggtgaaaaagtagcagccggttcgattctaggtcgtgtaccacaa
gcatcttcaggtaccaaagatattaccggtggtctgccacgtgtagccgatttattcgaa
gctcgtcgtccaaaagatcacgctatcatggcagaaatgagcggtgtcgttagctttggt
aaagaaaccaaaggtaaaaaccgctttatcattactaatgaagatggcgagattcatgaa
gagctgatcccgaaatggcgtcaaattaacgtctttgaaaacgagacagttgcccgtggt
gaggttattgctgatggtccacaaaatccgcatgatatcttacgtctaaaaggacaaacc
gcgcttgctgattatatcgtcaacgaagtacaggacgtttatcgtctgcagggcgtaaaa
atcaacgataagcacatcgaagtcattattcgtcagatgttgcgtaaagttgagattacg
gatggcggtgattcaaatcactttaaaggcgatcaggtagaatatgctgatatcaaagca
ttgaatgctaagctggaagcggaagataaattcccagttcagtttgagcgtcaattactt
ggtatcaccaaagcaagcttggcaacggaaagcttcatctcagccgcatcgttccaggaa
accacacgtgtcctaacggctgctgcggttactggtaaagtggatgagctacgtggtctg
aaagaaaacgtggtggttggtcgcttaatccctgctggtacgggtcttgcttatcataaa
gctcgtaaagaaaaagcggagcaaaaactgcaggataaagacttaaatgcagcgtttgat
atgtcagcgactactgacagtaaagactttgcaagtttcgatgaagcgtttgctcaagag
ctgaatcaaggtaatcattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG ORTHOLOGY (1)   
   RefGene (50)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (70)   

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