KEGG   Pseudoalteromonas atlantica: Patl_0051Help
Entry
Patl_0051         CDS       T00372                                 

Definition
(GenBank) Formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase (EC:3.2.2.23 4.2.99.18)
  KO
K10563  
formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
pat  Pseudoalteromonas atlantica
Pathway
Base excision repair
Brite
KEGG Orthology (KO) [BR:pat00001]
 Genetic Information Processing
  Replication and repair
   03410 Base excision repair
    Patl_0051
Enzymes [BR:pat01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     Patl_0051
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     Patl_0051
DNA repair and recombination proteins [BR:pat03400]
 Prokaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     Patl_0051
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
JGI: 
UniProt: 
Position
60939..61751
Genome map
AA seq 270 aa AA seqDB search
MPELPEVEVSRLGISPHLIGQHIEQIIVRHKQLRWWVPDDVHLAEGHKVNDVRRRAKYLF
IDTDAGSIILHLGMSGKLRIVNSETPVIKHDHIDIVLTNGVCLRFNDARRFGACLWQRVG
DPEIGMIAALGPEPLTSDFDGQRLYDLSRTKNVPVKNFIMDNKVVVGVGNIYANESLFIA
GIDPRKAAKKVSKKSYLALGDIIKQVLAKAIEQGGTTLKDFTQADGNPGYFAQHLRVYGR
KGQACEVCESEIQSVTLGQRNTFFCEQCQK
NT seq 813 nt NT seq  +upstreamnt  +downstreamnt
atgcctgaattacccgaagttgaagtgagccgtttaggcattagcccacacttaattggt
cagcatattgagcagattattgtgcgtcataaacaattacgttggtgggtgcctgatgac
gtgcatttagctgaggggcacaaggtgaatgacgtgcgtcgtcgcgccaagtacctattt
attgataccgatgcaggtagcattattttgcatttgggtatgtcgggtaaattacggatt
gtgaacagtgaaacaccggtgattaaacatgatcatatcgatatcgtattgaccaatggt
gtgtgtttgcgtttcaacgacgctcgtcgctttggcgcttgtttatggcaacgtgtcggc
gaccctgaaattggtatgatagccgctcttgggcctgagccattaacatctgactttgat
ggacaacgcttatatgatctttctcgcaccaagaatgtgccagtgaagaactttatcatg
gacaacaaagtcgtggtcggcgttgggaatatctacgccaatgagtcgttattcattgct
ggtattgacccacgcaaagcagctaaaaaagtcagcaaaaaaagttatttagcgttaggt
gacattattaagcaagtactcgcaaaagcgatagagcagggcggtacaacgttaaaagac
tttacccaagcagatggcaacccaggctattttgcacagcacctgcgcgtatatgggcgt
aaaggccaagcgtgcgaagtctgcgagagcgaaattcagtcagtgaccctagggcagcgt
aatacgtttttttgtgagcagtgccaaaaatag

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