KEGG T00372: Patl

Pseudoalteromonas atlantica: Patl_4065

Entry

Patl_4065 CDS T00372

Definition

glycoside hydrolase

Orthology

K01190

beta-galactosidase [EC:3.2.1.23]

Organism

pat Pseudoalteromonas atlantica

Pathway

pat00052	Galactose metabolism
pat00511	Other glycan degradation
pat00600	Sphingolipid metabolism
pat01100	Metabolic pathways

Class

Metabolism; Carbohydrate metabolism; Galactose metabolism [PATH:pat00052]
Metabolism; Lipid metabolism; Sphingolipid metabolism [PATH:pat00600]
Metabolism; Glycan biosynthesis and metabolism; Other glycan degradation [PATH:pat00511]

SSDB

Motif

Pfam:

Glyco_hydro_2_C Bgal_small_N Glyco_hydro_2_N Glyco_hydro_2 LEA_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4888127..4891264)

AA seq 1045 aa
MTYPQSSTVPDWQNPEVFAINKEPARSSFYGFSDDPQGYVDSPFMSQDYLSLNGEWDFHW
VKAPNLRPLDFYTPEFDSSQWDKIAVPGNWQLLGYGAANYINTAVDFAKHPIAGDVPEDN
NPVGSYRRHFALPDNWQDKHVFVYLGAVKSAFYIWVNGHKVGYSQDSKTPAEFDITQYVQ
AGDNVIALEVYRWSDGTYLELQDMWRLSGIERDVYVYSTPKVRIRDFHALSTLDNQYLHG
EFSLAVNIHSHVGGQESAGKDYQLQARLFDSDLTPVFEQTVTLENWESQCTDLLLTGKIK
NVAKWSAETPHLYQLKLTLLNEKREPLQYIYSRVGFRTSELKNGNVLINGQPVLFKGVNR
HDHDPVTGHVISRDSMRRDMQLLKQFNINAVRTSHYPNDPYWYALADEYGMYLVDEANIE
SHGIGAANQAISYEPKDHMGNMPNWKGAYLDRVSNMYERDKNHPSIVIWSIGNETGDGPN
MEALYDWLKTKTSMPVMSEQAQLRRHTDMYSQMYAPIPVLEHYAELGETRPLILCEYEHA
MGNSMGNLADYWRVIEHYPLLQGGFIWDWVDQTFALTSEDGTPYWGYGGDMEEPGMYHDG
NFSANGVMAADRTPNPHAFEVQAVYQHMNIERVDFEKHTIAVRNKRYFTDLSDVSLHWRI
EENGHVVESGVIEELEIPAQSTRELSLSVAVKPTAGAEYFANFEFVSRFGSDMIPAGFTV
ARSQIPLTHLSEAVHKSQDITKEACAKHDMFRANETDAQLQCSGDDFSIEFDLATGLLCA
YQLQNESMLLEAIRPEFWRAPTDNDFGEGFPEKAKDWQYGGQHIELSAFNWQSLKNDQGQ
IQAIEVSTEHYLTDVQSRYLSKYTIDADGCVTFDIWLYAAPHQFHSALPRIGSLLQMPSQ
FDQVSWFGRGPHENYWDRKTSAFVGRYAKSVDELYFPYVRPQENGYRSDVRSVTFSNDNG
LGLTFDGLPQIGFGAQRYDVHEYDQFDKRGLHPHELTKHDRLFINIDYKQRGVAGTDSWG
TAPLFKYTLPWRDYHYGFIMKPCRA

NT seq 3138 nt +upstreamnt +downstreamnt
atgacatatcctcaatcttctactgtgcctgattggcaaaaccccgaagtattcgccatt
aacaaagagccagcgcgtagctcattttatggcttttcagatgacccacaggggtacgta
gattcgccgtttatgtctcaagactatttgagtcttaatggtgagtgggattttcattgg
gtgaaggccccaaacttgcgaccattagacttttacactcctgaatttgactccagtcag
tgggataaaatagccgtcccgggtaattggcaattgttgggctatggtgcggcgaactac
atcaatacagcagtggatttcgctaagcacccgattgcaggtgatgtgcctgaggacaat
aacccagtaggctcttatcggcgtcactttgccttgcctgataattggcaagataagcac
gttttcgtctatttaggggcagtgaaatcggcgttttatatttgggtaaatggccataaa
gtcggttactcacaagattccaaaacccctgcagaatttgatattacccagtacgtgcaa
gcgggtgataacgtgattgcactggaggtgtaccgctggtctgacggcacttatctagaa
ttacaagatatgtggcgtttatcgggcattgagcgtgacgtgtatgtatatagtacacct
aaggtacgcatacgcgactttcatgctttgagcacccttgataaccaatacctgcatggg
gagttttcattagcagtcaatatacattcgcatgtagggggccaagaaagtgcgggaaaa
gactatcagttacaggcgcgcttatttgactctgatttaactcccgtttttgagcaaacc
gttacattagagaattgggagtcacaatgtactgacttgcttttgaccggtaagataaaa
aatgtggccaagtggagcgccgaaacaccgcacttatatcaactaaaactgaccttgctt
aacgaaaagcgtgaacctttgcagtacatatactcccgcgttggttttcgaactagtgag
ttgaaaaatggcaatgtgttgatcaacggtcagcccgtgctattcaaaggggttaaccgc
catgatcacgaccctgttacgggacacgtgataagtcgcgattccatgcgccgagatatg
cagctgctcaagcagtttaatattaatgcggtacgaacttctcattacccaaatgatcct
tattggtatgcgctggcggacgaatatggaatgtatctggtggatgaagccaatattgag
tcccatggcataggcgcagcgaaccaagcgatatcttacgagcctaaagaccatatgggt
aacatgcctaactggaaaggcgcgtatcttgatcgagtctccaatatgtacgagcgagac
aagaatcacccgagtattgttatttggtcaatcggtaatgaaacgggcgatgggccgaat
atggaagcgttatatgattggctgaaaaccaaaaccagcatgcccgtgatgtcagagcaa
gcccaattgcgtcgtcatacagatatgtatagccagatgtatgcgcccatccctgtgctt
gagcactacgcggagctcggcgaaacccgcccgctcattttatgcgagtacgagcacgct
atgggtaactccatgggcaacttagctgattattggcgggtgattgagcactatcctctt
ttgcaagggggattcatatgggattgggtagaccaaacctttgcactgacgtcagaagac
ggcacgccgtactggggatacggtggtgacatggaagagccgggtatgtatcacgatggt
aacttcagtgctaatggggtgatggcggcagacagaactcctaaccctcatgcatttgaa
gttcaagcggtttatcagcacatgaatattgagcgggttgatttcgaaaagcacaccatt
gccgttagaaataagcgctactttactgatttatctgacgtctcgctgcattggcgcatc
gaggaaaacggccatgttgtcgaaagtggggtgattgaggaattggagattccagcacaa
tccactcgtgagctttctttgagtgtggctgtaaaaccaacagcgggtgctgagtacttc
gctaactttgagtttgttagtcggtttggcagcgatatgatcccagctgggtttactgtg
gctcgcagtcaaatcccgttgacgcatttatctgaagctgtgcataaatcacaagacatc
acaaaagaagcttgtgcaaagcacgatatgttcagggctaatgaaactgatgcccaactg
caatgcagcggagatgatttctcgattgaatttgatttagcaacagggctgttatgtgct
taccaattgcaaaacgaatcaatgttgcttgaagcaatccgccctgaattttggcgagca
cctacggacaatgactttggtgaaggctttcctgagaaagccaaagattggcagtacggc
gggcaacatatcgaattaagcgcatttaattggcaatcactaaagaatgatcaagggcaa
attcaggctattgaggtttccacagagcactatttaacagacgtacaaagccgttattta
agcaaatacaccattgatgctgatggctgtgtcacctttgatatttggctttatgctgca
cctcatcaatttcacagtgccttgccgcgaataggaagtttgctacaaatgcctagccag
ttcgaccaagtaagttggtttggacgcggcccgcacgaaaactattgggaccgcaagact
tcggcttttgtagggcgctacgctaaatcggttgatgaattgtatttcccttatgttcgg
ccccaagaaaatggttatcgcagtgatgtgcgtagcgtgaccttcagtaatgacaatgga
ctaggtttgacctttgatggattaccgcaaatcggttttggcgcacaacggtatgacgtg
cacgaatatgatcaattcgacaagcgcggtttgcacccacatgaacttacaaaacacgat
cgcctgtttatcaatattgattacaaacagcgtggtgtggcaggtactgattcttgggga
actgcgccattgtttaaatacactttgccatggcgtgattatcactatggatttatcatg
aagccgtgtcgagcataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (6)   
   KEGG ENZYME (1)   
   KEGG REACTION (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-PAT (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (34)   

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