KEGG   PATHWAY: atc00680Help
Entry
atc00680                    Pathway                                
Name
Methane metabolism - Agrobacterium tumefaciens C58 (Cereon)
Class
Metabolism; Energy Metabolism
BRITE hierarchy
Pathway map
atc00680  Methane metabolism
atc00680

All organismsOrtholog table
Module
M00303  Methane oxidation, methylotroph, methane => CO2 [PATH:atc00680]
Disease H00203  Acatalasia
Other DBs
GO: 0015947
Organism
Agrobacterium tumefaciens C58 (Cereon) [GN:atc]
Gene
AGR_L_346   [KO:K00126] [EC:1.2.1.2]
AGR_C_2854   [KO:K00123] [EC:1.2.1.2]
AGR_L_347   [KO:K00123] [EC:1.2.1.2]
AGR_L_349   [KO:K00124] [EC:1.2.1.2]
AGR_L_350   [KO:K00127] [EC:1.2.1.2]
AGR_pAT_722   [KO:K03781] [EC:1.11.1.6]
AGR_L_481   [KO:K03782] [EC:1.11.1.7 1.11.1.6]
AGR_C_3072   [KO:K00121] [EC:1.1.1.1 1.1.1.284]
AGR_C_2723   [KO:K01070] [EC:3.1.2.12]
AGR_L_2756   [KO:K00492] [EC:1.14.13.-]
AGR_L_2773   [KO:K00492] [EC:1.14.13.-]
AGR_C_2619   [KO:K00297] [EC:1.5.1.20]
AGR_C_3850   [KO:K00297] [EC:1.5.1.20]
AGR_C_2156  shmT [KO:K00600] [EC:2.1.2.1]
AGR_L_1099  shmT [KO:K00600] [EC:2.1.2.1]
Compound
C00011  CO2
C00024  Acetyl-CoA
C00037  Glycine
C00058  Formate
C00065  L-Serine
C00067  Formaldehyde
C00080  H+
C00085  D-Fructose 6-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00132  Methanol
C00143  5,10-Methylenetetrahydrofolate
C00184  Glycerone
C00199  D-Ribulose 5-phosphate
C00218  Methylamine
C00231  D-Xylulose 5-phosphate
C00237  CO
C00282  Hydrogen
C00440  5-Methyltetrahydrofolate
C00543  Dimethylamine
C00565  Trimethylamine
C00862  Methanofuran
C01001  Formylmethanofuran
C01031  S-Formylglutathione
C01046  N-Methyl-L-glutamate
C01104  Trimethylamine N-oxide
C01217  5,6,7,8-Tetrahydromethanopterin
C01274  5-Formyl-5,6,7,8-tetrahydromethanopterin
C01438  Methane
C04330  5,10-Methenyltetrahydromethanopterin
C04377  5,10-Methylenetetrahydromethanopterin
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06020  Methylcorrinoid
C06021  Corrinoid
C14180  S-(Hydroxymethyl)glutathione
Reference PMID:11830598
  Authors Graham DE, Xu H, White RH
  Title Identification of coenzyme M biosynthetic phosphosulfolactate synthase: a new family of sulfonate-biosynthesizing enzymes.
  Journal J Biol Chem 277:13421-9 (2002)
Reference PMID:15168610
  Authors Deppenmeier U
  Title The membrane-bound electron transport system of Methanosarcina species.
  Journal J Bioenerg Biomembr 36:55-64 (2004)
Reference PMID:15353801
  Authors Hallam SJ, Putnam N, Preston CM, Detter JC, Rokhsar D, Richardson PM, DeLong EF
  Title Reverse methanogenesis: testing the hypothesis with environmental genomics.
  Journal Science 305:1457-62 (2004)
Reference PMID:16024727
  Authors Welander PV, Metcalf WW
  Title Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway.
  Journal Proc Natl Acad Sci U S A 102:10664-9 (2005)
Reference PMID:16278835
  Authors Yurimoto H, Kato N, Sakai Y
  Title Assimilation, dissimilation, and detoxification of formaldehyde, a central metabolic intermediate of methylotrophic metabolism.
  Journal Chem Rec 5:367-75 (2005)
Reference PMID:16385054
  Authors Fricke WF, Seedorf H, Henne A, Kruer M, Liesegang H, Hedderich R, Gottschalk G, Thauer RK.
  Title The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H2 for methane formation and ATP synthesis.
  Journal J Bacteriol 188:642-58 (2006)
Reference PMID:16428816
  Authors Kato N, Yurimoto H, Thauer RK
  Title The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal Biosci Biotechnol Biochem 70:10-21 (2006)
Reference PMID:18587410
  Authors Thauer RK, Kaster AK, Seedorf H, Buckel W, Hedderich R
  Title Methanogenic archaea: ecologically relevant differences in energy conservation.
  Journal Nat Rev Microbiol 6:579-91 (2008)
Reference PMID:20437165
  Authors Liffourrena AS, Salvano MA, Lucchesi GI
  Title Pseudomonas putida A ATCC 12633 oxidizes trimethylamine aerobically via two different pathways.
  Journal Arch Microbiol 192:471-6 (2010)
Related
pathway
atc00030  Pentose phosphate pathway
atc00260  Glycine, serine and threonine metabolism
atc00910  Nitrogen metabolism
atc00920  Sulfur metabolism
KO pathway ko00680
DBGET integrated database retrieval system