KEGG   PATHWAY: aav03430
Entry
aav03430                    Pathway                                
Name
Mismatch repair - Paracidovorax citrulli
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
aav03430  Mismatch repair
aav03430

Other DBs
GO: 0006298
Organism
Paracidovorax citrulli [GN:aav]
Gene
Aave_2052  DNA mismatch repair protein MutS [KO:K03555]
Aave_1300  DNA mismatch repair protein MutL [KO:K03572]
Aave_1916  ATP-dependent DNA helicase UvrD [KO:K03657] [EC:5.6.2.4]
Aave_3186  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
Aave_0646  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
Aave_0675  UvrD/REP helicase [KO:K03657] [EC:5.6.2.4]
Aave_3236  Exodeoxyribonuclease I subunit C [KO:K01141] [EC:3.1.11.1]
Aave_2567  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Aave_2013  exodeoxyribonuclease VII, small subunit [KO:K03602] [EC:3.1.11.6]
Aave_3702  exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Aave_0559  single-strand binding protein/Primosomal replication protein n [KO:K03111]
Aave_4713  single-strand binding protein [KO:K03111]
Aave_2684  single-strand binding protein/Primosomal replication protein n [KO:K03111]
Aave_3240  DNA polymerase III, alpha subunit [KO:K02337] [EC:2.7.7.7]
Aave_0002  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Aave_2644  DNA polymerase III, subunits gamma and tau [KO:K02343] [EC:2.7.7.7]
Aave_4546  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Aave_3411  DNA-directed DNA polymerase [KO:K02341] [EC:2.7.7.7]
Aave_0016  DNA-directed DNA polymerase [KO:K02342] [EC:2.7.7.7]
Aave_2449  DNA polymerase III, epsilon subunit [KO:K02342] [EC:2.7.7.7]
Aave_3161  DNA polymerase III chi subunit, HolC [KO:K02339] [EC:2.7.7.7]
Aave_2841  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Aave_1638  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Aave_2898  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Aave_4108  D12 class N6 adenine-specific DNA methyltransferase [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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