KEGG   PATHWAY: adk00630Help
Entry
adk00630                    Pathway                                

Name
Glyoxylate and dicarboxylate metabolism - Alicycliphilus denitrificans K601
Class
Metabolism; Carbohydrate metabolism
BRITE hierarchy
Pathway map
adk00630  Glyoxylate and dicarboxylate metabolism
adk00630

Ortholog table
Module
adk_M00012  Glyoxylate cycle [PATH:adk00630]
Organism
Alicycliphilus denitrificans K601 [GN:adk]
Gene
Alide2_2832  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
Alide2_4446  malate synthase G [KO:K01638] [EC:2.3.3.9]
Alide2_2216  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Alide2_2209  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Alide2_3213  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Alide2_1376  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Alide2_0975  Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Alide2_2219  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.99 4.2.1.3]
Alide2_2374  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_2456  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_0131  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_0157  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1838  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1166  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1672  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_1511  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_2952  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4336  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4176  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4259  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_4115  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_3219  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_3245  acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
Alide2_2457  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Alide2_1719  acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
Alide2_1233  Isovaleryl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
Alide2_2484  acetyl-CoA carboxylase, biotin carboxylase [KO:K01965] [EC:6.4.1.3]
Alide2_2483  Propionyl-CoA carboxylase [KO:K01966] [EC:2.1.3.15 6.4.1.3]
Alide2_3184  Biotin carboxylase [KO:K11263] [EC:6.3.4.14 6.4.1.3 6.4.1.2]
Alide2_2481  methylmalonyl-CoA mutase, large subunit [KO:K01847] [EC:5.4.99.2]
Alide2_0455  D-lactate dehydrogenase (cytochrome) [KO:K00104] [EC:1.1.3.15]
Alide2_0231  FAD linked oxidase domain protein [KO:K11472]
Alide2_0233  protein of unknown function DUF224 cysteine-rich region domain protein [KO:K11473]
Alide2_1655  Catalase [KO:K03781] [EC:1.11.1.6]
Alide2_1253  HAD-superfamily hydrolase, subfamily IA, variant 3 [KO:K01091] [EC:3.1.3.18]
Alide2_4398  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
Alide2_1430  glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
Alide2_2128  Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
Alide2_2543  Glycine dehydrogenase (decarboxylating) [KO:K00281] [EC:1.4.4.2]
Alide2_2541  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
Alide2_0596  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alide2_2417  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alide2_3024  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Alide2_2542  glycine cleavage system H protein [KO:K02437]
Alide2_1351  glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
Alide2_1352  hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
Alide2_1353  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
Alide2_1346  Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
Alide2_2570  Glycerate dehydrogenase [KO:K00018] [EC:1.1.1.29]
Alide2_4142  Hydroxypyruvate reductase [KO:K12972] [EC:1.1.1.81 1.1.1.79]
Alide2_3272  Glyoxylate reductase [KO:K00090] [EC:1.1.1.215 1.1.1.81 1.1.1.79]
Alide2_1344  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
Alide2_1710  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
Alide2_3009  2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.3.42 4.1.2.14]
Alide2_1046  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
Alide2_1052  Nitrate reductase [KO:K00123] [EC:1.17.1.9]
Alide2_1045  Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [KO:K22515] [EC:1.17.1.9]
Alide2_1053  4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [KO:K00124]
Alide2_1055  formate dehydrogenase, gamma subunit [KO:K00127]
Alide2_3548  arylformamidase [KO:K07130] [EC:3.5.1.9]
Alide2_0457  formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Alide2_1701  N-formylglutamate amidohydrolase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
KO pathway
ko00630   

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