KEGG   PATHWAY: aly00630Help
Entry
aly00630                    Pathway                                

Name
Glyoxylate and dicarboxylate metabolism - Arabidopsis lyrata (lyrate rockcress)
Class
Metabolism; Carbohydrate metabolism
BRITE hierarchy
Pathway map
Glyoxylate and dicarboxylate metabolism
aly00630

All organismsOrtholog table
Module
Glyoxylate cycle [PATH:aly00630]
Photorespiration [PATH:aly00630]
Organism
Arabidopsis lyrata (lyrate rockcress) [GN:aly]
Gene
hypothetical protein; K01637 isocitrate lyase [EC:4.1.3.1] [KO:K01637] [EC:4.1.3.1]
hypothetical protein; K01638 malate synthase [EC:2.3.3.9] [KO:K01638] [EC:2.3.3.9]
hypothetical protein; K00025 malate dehydrogenase [EC:1.1.1.37] [KO:K00025] [EC:1.1.1.37]
hypothetical protein; K00025 malate dehydrogenase [EC:1.1.1.37] [KO:K00025] [EC:1.1.1.37]
cytosolic malate dehydrogenase; K00025 malate dehydrogenase [EC:1.1.1.37] [KO:K00025] [EC:1.1.1.37]
PMDH1; peroxisomal NAD-malate dehydrogenase 1 [KO:K00026] [EC:1.1.1.37]
PMDH2; peroxisomal NAD-malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
chloroplast NAD-MDH; K00026 malate dehydrogenase [EC:1.1.1.37] [KO:K00026] [EC:1.1.1.37]
mitochondrial malate dehydrogenase; K00026 malate dehydrogenase [EC:1.1.1.37] [KO:K00026] [EC:1.1.1.37]
hypothetical protein; K00026 malate dehydrogenase [EC:1.1.1.37] [KO:K00026] [EC:1.1.1.37]
hypothetical protein; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
hypothetical protein; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
hypothetical protein; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
hypothetical protein; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
hypothetical protein; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
hypothetical protein; K01681 aconitate hydratase [EC:4.2.1.3] [KO:K01681] [EC:4.2.1.3]
hypothetical protein; K01681 aconitate hydratase [EC:4.2.1.3] [KO:K01681] [EC:4.2.1.3]
hypothetical protein; K01681 aconitate hydratase [EC:4.2.1.3] [KO:K01681] [EC:4.2.1.3]
aconitate hydratase; K01681 aconitate hydratase [EC:4.2.1.3] [KO:K01681] [EC:4.2.1.3]
hypothetical protein; K01681 aconitate hydratase [EC:4.2.1.3] [KO:K01681] [EC:4.2.1.3]
hypothetical protein; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
ACAT2; acetoacetyl-CoA thiolase 2, embryo defective 1276 [KO:K00626] [EC:2.3.1.9]
hypothetical protein; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] [KO:K11517] [EC:1.1.3.15]
hypothetical protein; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] [KO:K11517] [EC:1.1.3.15]
hypothetical protein; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] [KO:K11517] [EC:1.1.3.15]
hypothetical protein; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] [KO:K11517] [EC:1.1.3.15]
hypothetical protein; K11517 (S)-2-hydroxy-acid oxidase [EC:1.1.3.15] [KO:K11517] [EC:1.1.3.15]
F5M15.5; K03781 catalase [EC:1.11.1.6] [KO:K03781] [EC:1.11.1.6]
hypothetical protein; K03781 catalase [EC:1.11.1.6] [KO:K03781] [EC:1.11.1.6]
hypothetical protein; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
large subunit of riblose-1; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] [KO:K01601] [EC:4.1.1.39]
large subunit of riblose-1; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] [KO:K01601] [EC:4.1.1.39]
hypothetical protein; K01601 ribulose-bisphosphate carboxylase large chain [EC:4.1.1.39] [KO:K01601] [EC:4.1.1.39]
ribulose bisphosphate carboxylase small chain 1A; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] [KO:K01602] [EC:4.1.1.39]
ribulose bisphosphate carboxylase small chain 1B; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] [KO:K01602] [EC:4.1.1.39]
ribulose bisphosphate carboxylase; K01602 ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] [KO:K01602] [EC:4.1.1.39]
hypothetical protein; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
AOAT2; alanine-2-oxoglutarate aminotransferase 2 [KO:K14272] [EC:2.6.1.- 2.6.1.44 2.6.1.2 2.6.1.4]
GGT1; alanine-2-oxoglutarate aminotransferase 1 [KO:K14272] [EC:2.6.1.- 2.6.1.44 2.6.1.2 2.6.1.4]
hypothetical protein; K00284 glutamate synthase (ferredoxin) [EC:1.4.7.1] [KO:K00284] [EC:1.4.7.1]
GLU1; ferredoxin-dependent glutamate synthase 1 [KO:K00284] [EC:1.4.7.1]
ATGSR1; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
hypothetical protein; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
ATGSKB6; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
ATGSR2; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
hypothetical protein; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
GLN1_4; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
hypothetical protein; K02437 glycine cleavage system H protein [KO:K02437]
hypothetical protein; K02437 glycine cleavage system H protein [KO:K02437]
hypothetical protein; K02437 glycine cleavage system H protein [KO:K02437]
hypothetical protein; K15918 D-glycerate 3-kinase [EC:2.7.1.31] [KO:K15918] [EC:2.7.1.31]
hypothetical protein; K15893 hydroxypyruvate reductase 1 [KO:K15893]
oxidoreductase family protein; K15919 hydroxypyruvate reductase 2 [KO:K15919]
hypothetical protein; K00122 formate dehydrogenase [EC:1.2.1.2] [KO:K00122] [EC:1.2.1.2]
hypothetical protein; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] [KO:K01433] [EC:3.5.1.10]
hypothetical protein; K01433 formyltetrahydrofolate deformylase [EC:3.5.1.10] [KO:K01433] [EC:3.5.1.10]
hypothetical protein; K01455 formamidase [EC:3.5.1.49] [KO:K01455] [EC:3.5.1.49]
Compound
C00007  
Oxygen
C00011  
CO2
C00014  
Ammonia
C00022  
Pyruvate
C00024  
Acetyl-CoA
C00025  
L-Glutamate
C00026  
2-Oxoglutarate
C00027  
Hydrogen peroxide
C00036  
Oxaloacetate
C00037  
Glycine
C00042  
Succinate
C00048  
Glyoxylate
C00058  
Formate
C00064  
L-Glutamine
C00065  
L-Serine
C00091  
Succinyl-CoA
C00100  
Propanoyl-CoA
C00136  
Butanoyl-CoA
C00149  
(S)-Malate
C00158  
Citrate
C00160  
Glycolate
C00168  
Hydroxypyruvate
C00197  
3-Phospho-D-glycerate
C00209  
Oxalate
C00258  
D-Glycerate
C00266  
Glycolaldehyde
C00311  
Isocitrate
C00313  
Oxalyl-CoA
C00332  
Acetoacetyl-CoA
C00417  
cis-Aconitate
C00552  
meso-Tartaric acid
C00683  
(S)-Methylmalonyl-CoA
C00798  
Formyl-CoA
C00877  
Crotonoyl-CoA
C00888  
Pentanoyl-CoA
C00898  
(R,R)-Tartaric acid
C00975  
Dihydroxyfumarate
C00988  
2-Phosphoglycolate
C01127  
4-Hydroxy-2-oxoglutarate
C01146  
2-Hydroxy-3-oxopropanoate
C01182  
D-Ribulose 1,5-bisphosphate
C01213  
(R)-Methylmalonyl-CoA
C01380  
Ethylene glycol
C01989  
3-Ethylmalate
C01990  
3-Oxalomalate
C02123  
3-Propylmalate
C02405  
Formyl phosphate
C03217  
2-Hydroxy-3-oxoadipate
C03459  
2-Hydroxy-3-oxosuccinate
C03548  
trans-2,3-Epoxysuccinate
C03561  
(R)-3-Hydroxybutanoyl-CoA
C04348  
L-Malyl-CoA
C06027  
L-erythro-3-Methylmalyl-CoA
C06028  
Mesaconyl-CoA
C06049  
N-Formylderivatives
C18026  
(2S)-Ethylmalonyl-CoA
C18324  
(2S)-Methylsuccinyl-CoA
C20238  
(2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
KO pathway
 

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