KEGG   PATHWAY: asl00020
Entry
asl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Aequorivita sublithincola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
asl00020  Citrate cycle (TCA cycle)
asl00020

Module
asl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:asl00020]
asl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:asl00020]
asl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:asl00020]
asl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:asl00020]
asl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:asl00020]
Other DBs
GO: 0006099
Organism
Aequorivita sublithincola [GN:asl]
Gene
Aeqsu_1937  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
Aeqsu_0301  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Aeqsu_0757  aconitase [KO:K01681] [EC:4.2.1.3]
Aeqsu_0264  isocitrate dehydrogenase, NADP-dependent, monomeric type [KO:K00031] [EC:1.1.1.42]
Aeqsu_1435  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
Aeqsu_2086  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00658] [EC:2.3.1.61]
Aeqsu_1436  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Aeqsu_1791  pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component [KO:K00658] [EC:2.3.1.61]
Aeqsu_3053  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Aeqsu_2621  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Aeqsu_2654  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Aeqsu_0057  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Aeqsu_1459  menaquinone-dependent succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Aeqsu_1458  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Aeqsu_1460  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Aeqsu_2977  fumarase, class II [KO:K01679] [EC:4.2.1.2]
Aeqsu_0584  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Aeqsu_2153  malate:quinone-oxidoreductase [KO:K00116] [EC:1.1.5.4]
Aeqsu_0969  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Aeqsu_1425  ATP-dependent phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Aeqsu_1723  pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Aeqsu_0706  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
Aeqsu_1724  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
asl00010  Glycolysis / Gluconeogenesis
asl00053  Ascorbate and aldarate metabolism
asl00061  Fatty acid biosynthesis
asl00071  Fatty acid degradation
asl00190  Oxidative phosphorylation
asl00220  Arginine biosynthesis
asl00250  Alanine, aspartate and glutamate metabolism
asl00280  Valine, leucine and isoleucine degradation
asl00350  Tyrosine metabolism
asl00470  D-Amino acid metabolism
asl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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