KEGG   PATHWAY: bac00920
Entry
bac00920                    Pathway                                
Name
Sulfur metabolism - Burkholderia ambifaria MC40-6
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
bac00920  Sulfur metabolism
bac00920

Module
bac_M00021  Cysteine biosynthesis, serine => cysteine [PATH:bac00920]
Other DBs
GO: 0006790
Organism
Burkholderia ambifaria MC40-6 [GN:bac]
Gene
BamMC406_2855  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K02048]
BamMC406_1517  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163]
BamMC406_1518  sulfate ABC transporter, inner membrane subunit CysT [KO:K02046]
BamMC406_1519  sulfate ABC transporter, inner membrane subunit CysW [KO:K02047]
BamMC406_1520  sulfate ABC transporter, ATPase subunit [KO:K02045] [EC:7.3.2.3]
BamMC406_4146  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
BamMC406_3921  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
BamMC406_4519  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
BamMC406_5751  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
BamMC406_3940  ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic ligand binding protein [KO:K15553]
BamMC406_4326  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
BamMC406_0035  NMT1/THI5 like domain protein [KO:K15553]
BamMC406_3496  ABC nitrate/sulfonate/bicarbonate transporter, periplasmic ligand binding protein [KO:K15553]
BamMC406_4151  NMT1/THI5 like domain protein [KO:K15553]
BamMC406_6250  ABC transporter substrate binding protein [KO:K15553]
BamMC406_1485  binding-protein-dependent transport systems inner membrane component [KO:K15554]
BamMC406_4150  binding-protein-dependent transport systems inner membrane component [KO:K15554]
BamMC406_6248  binding-protein-dependent transport systems inner membrane component [KO:K15554]
BamMC406_0033  binding-protein-dependent transport systems inner membrane component [KO:K15554]
BamMC406_1486  ABC transporter related [KO:K15555] [EC:7.6.2.14]
BamMC406_6249  ABC transporter related [KO:K15555] [EC:7.6.2.14]
BamMC406_4149  ABC transporter related [KO:K15555] [EC:7.6.2.14]
BamMC406_0034  ABC transporter related [KO:K15555] [EC:7.6.2.14]
BamMC406_1484  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BamMC406_4153  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BamMC406_4325  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
BamMC406_5804  FMN reductase [KO:K00299] [EC:1.5.1.38]
BamMC406_5096  NADPH-dependent FMN reductase [KO:K00299] [EC:1.5.1.38]
BamMC406_2388  sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
BamMC406_2389  sulfate adenylyltransferase, small subunit [KO:K00957] [EC:2.7.7.4]
BamMC406_2390  adenylylsulfate reductase, thioredoxin dependent [KO:K00390] [EC:1.8.4.8 1.8.4.10]
BamMC406_4398  molybdopterin oxidoreductase [KO:K00380] [EC:1.8.1.2]
BamMC406_4393  nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein [KO:K00381] [EC:1.8.1.2]
BamMC406_2392  Sulfite reductase (ferredoxin) [KO:K00381] [EC:1.8.1.2]
BamMC406_1667  protein of unknown function DUF442 [KO:K17218] [EC:1.8.5.4]
BamMC406_3772  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
BamMC406_1988  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BamMC406_3153  Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
BamMC406_6147  cysteine synthase A [KO:K01738] [EC:2.5.1.47]
BamMC406_3037  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
BamMC406_3861  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
BamMC406_2492  selenium-binding protein [KO:K17285] [EC:1.8.3.4]
BamMC406_5805  Luciferase-like monooxygenase [KO:K17228] [EC:1.14.14.35]
BamMC406_1825  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
BamMC406_4191  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
BamMC406_5782  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
BamMC406_5533  acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
BamMC406_2639  acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
bac00260  Glycine, serine and threonine metabolism
bac00270  Cysteine and methionine metabolism
bac00680  Methane metabolism
KO pathway
ko00920   

DBGET integrated database retrieval system