| Entry |
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| Name |
Citrate cycle (TCA cycle) - Bacillus amyloliquefaciens subsp. plantarum CAU B946
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| Description |
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD: M00009], but contain genes for specific segments [MD: M00010 M00011].
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| Class |
Metabolism; Carbohydrate metabolism
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| Pathway map |
| Citrate cycle (TCA cycle) |

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| Module |
| Gluconeogenesis, oxaloacetate => fructose-6P [PATH: baq00020] | | Citrate cycle (TCA cycle, Krebs cycle) [PATH: baq00020] | | Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: baq00020] | | Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: baq00020] | | Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: baq00020] | | 2-oxoglutarate:ferredoxin oxidoreductase [PATH: baq00020] |
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| Other DBs |
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| Organism |
Bacillus amyloliquefaciens subsp. plantarum CAU B946 [GN: baq]
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| Gene |
| | | | | | | | | | | sucA; 2-oxoglutarate dehydrogenase E1 component [KO: K00164] [EC: 1.2.4.2] | | | | | | | | | | sucD; succinyl-CoA synthetase subunit alpha [KO: K01902] [EC: 6.2.1.5] | | sucC; succinyl-CoA synthetase subunit beta [KO: K01903] [EC: 6.2.1.5] | | sdhA; succinate dehydrogenase flavoprotein subunit [KO: K00239] [EC: 1.3.99.1] | | sdhB; succinate dehydrogenase iron-sulfur subunit [KO: K00240] [EC: 1.3.99.1] | | sdhC; succinate dehydrogenase cytochrome b-556 subunit [KO: K00241] | | | | | | | | | | pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO: K00161] [EC: 1.2.4.1] | | acoA; pyruvate dehydrogenase E1 component subunit alpha [KO: K00161] [EC: 1.2.4.1] | | pdhB; pyruvate dehydrogenase E1 component subunit beta [KO: K00162] [EC: 1.2.4.1] | | | | pdhC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO: K00627] [EC: 2.3.1.12] | | acoC; branched-chain alpha-keto acid dehydrogenase subunit E2 [KO: K00627] [EC: 2.3.1.12] |
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| Compound |
| Pyruvate | | Acetyl-CoA | | 2-Oxoglutarate | | Oxaloacetate | | Succinate | | Thiamin diphosphate | | Phosphoenolpyruvate | | Succinyl-CoA | | Fumarate | | (S)-Malate | | Citrate | | Isocitrate | | cis-Aconitate | | 2-(alpha-Hydroxyethyl)thiamine diphosphate | | Oxalosuccinate | | 3-Carboxy-1-hydroxypropyl-ThPP | | Enzyme N6-(lipoyl)lysine | | Enzyme N6-(dihydrolipoyl)lysine | | [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine | | [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine |
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| Reference |
(map 2) |
| Authors |
Nishizuka Y (ed). |
| Title |
[Metabolic Maps] (In Japanese) |
| Journal |
Tokyo Kagaku Dojin (1980) |
| Reference |
(map 3) |
| Authors |
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds). |
| Title |
[Cellular Functions and Metabolic Maps] (In Japanese) |
| Journal |
Tokyo Kagaku Dojin (1997) |
| Reference |
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| Authors |
Michal G. |
| Title |
Biochemical Pathways |
| Journal |
Wiley (1999) |
| KO pathway |
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