KEGG   PATHWAY: bcp00020
Entry
bcp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Blattabacterium Cpu (Cryptocercus punctulatus)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bcp00020  Citrate cycle (TCA cycle)
bcp00020

Module
bcp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bcp00020]
bcp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bcp00020]
bcp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bcp00020]
bcp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bcp00020]
bcp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bcp00020]
Other DBs
GO: 0006099
Organism
Blattabacterium Cpu (Cryptocercus punctulatus) [GN:bcp]
Gene
BLBCPU_508  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BLBCPU_017  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BLBCPU_263  icd; isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
BLBCPU_557  sucA; 2-oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
BLBCPU_010  dihydrolipoyllysine-residue acyltransferase [KO:K00658] [EC:2.3.1.61]
BLBCPU_556  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
BLBCPU_137  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BLBCPU_205  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BLBCPU_039  sucD; succinyl-CoA ligase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
BLBCPU_552  sucC; succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
BLBCPU_142  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BLBCPU_143  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BLBCPU_141  sdhC; succinate dehydrogenase cytochrome b subunit [KO:K00241]
BLBCPU_504  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BLBCPU_576  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BLBCPU_069  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BLBCPU_091  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BLBCPU_414  pdhB; pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BLBCPU_090  aceF; dihydrolipoamide acyltransferase E2 component [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bcp00010  Glycolysis / Gluconeogenesis
bcp00061  Fatty acid biosynthesis
bcp00190  Oxidative phosphorylation
bcp00220  Arginine biosynthesis
bcp00250  Alanine, aspartate and glutamate metabolism
bcp00280  Valine, leucine and isoleucine degradation
bcp00350  Tyrosine metabolism
bcp00470  D-Amino acid metabolism
bcp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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