KEGG PATHWAY: bja00630

PATHWAY: bja00630

Entry

bja00630 Pathway

Name

Glyoxylate and dicarboxylate metabolism - Bradyrhizobium japonicum USDA110

Class

Metabolism; Carbohydrate metabolism

Pathway map

bja00630

Glyoxylate and dicarboxylate metabolism

Module

bja_M00012	Glyoxylate cycle [PATH:bja00630]
bja_M00373	Ethylmalonyl pathway [PATH:bja00630]
bja_M00532	Photorespiration [PATH:bja00630]

Organism

Bradyrhizobium japonicum USDA110 [GN:bja]

Gene

blr2455	isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1] [KO:K01637] [EC:4.1.3.1]
bll1474	glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
bll0456	mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bll6374	citrate synthase; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
blr0183	cis; citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
blr4839	gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
bll0182	cisZ; citrate synthase [KO:K01647] [EC:2.3.3.1]
bll0466	acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.- 4.2.1.3]
bll7819	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
bll0226	atoB; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
bll7400	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
bll3949	acetyl-CoA C-acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
blr3724	phbA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
blr2427	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
bll2936	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
bll5335	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
bll6176	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
blr7806	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
blr1159	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
blr3924	acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
bll0225	phbB; acetoacetyl CoA reductase [KO:K00023] [EC:1.1.1.36]
blr3725	phbB; acetoacetyl CoA reductase [KO:K00023] [EC:1.1.1.36]
blr7857	3-hydroxybutyryl-CoA dehydratase; K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55] [KO:K01715] [EC:4.2.1.55]
bll4901	hypothetical protein; K05606 methylmalonyl-CoA/ethylmalonyl-CoA epimerase [EC:5.1.99.1] [KO:K05606] [EC:5.1.99.1]
bll5267	pccA; propionyl-coenzyme A carboxylase alpha polypeptide [KO:K01965] [EC:6.4.1.3]
bll5356	propionyl-CoA carboxylase; K01966 propionyl-CoA carboxylase beta chain [EC:6.4.1.3] [KO:K01966] [EC:6.4.1.3]
bll3054	mutA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
bll3056	mutA; methylmalonyl-CoA mutase small subunit [KO:K01847] [EC:5.4.99.2]
bll7543	glcD; glycolate oxidase subunit [KO:K00104] [EC:1.1.3.15]
bll7541	glcE; glycolate oxidase subunit [KO:K11472]
bll7540	glcF; glycolate oxidase iron-sulfur subunit [KO:K11473]
bll0292	sulfur regulated plasmid-encoded protein; K03781 catalase [EC:1.11.1.6] [KO:K03781] [EC:1.11.1.6]
blr6251	hypothetical protein; K03781 catalase [EC:1.11.1.6] [KO:K03781] [EC:1.11.1.6]
bll3754	gph; phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
bll0498	phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
bll8046	phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
blr4704	phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
blr5147	hypothetical protein; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
blr2585	rbcL; ribulose bisophosphate carboxylase [KO:K01601] [EC:4.1.1.39]
blr2586	cbbS; ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit [KO:K01602] [EC:4.1.1.39]
bll6037	SgaA serine-glyoxylate aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
bll6039	SgaA serine-glyoxylate aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
blr0373	aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51] [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
blr4949	glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
blr4169	glnII; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
blr4835	glnA; glutamine synthetase [KO:K01915] [EC:6.3.1.2]
bll1069	glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
bll5033	glyA; serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
blr5752	gcvH; glycine cleavage system protein H [KO:K02437]
blr3166	gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
blr3167	hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
blr2929	hypothetical protein; K01816 hydroxypyruvate isomerase [EC:5.3.1.22] [KO:K01816] [EC:5.3.1.22]
blr3168	oxidoredutase; K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60] [KO:K00042] [EC:1.1.1.60]
bll0766	2-hydroxyacid dehydrogenase; K00015 glyoxylate reductase [EC:1.1.1.26] [KO:K00015] [EC:1.1.1.26]
bll2918	glycerate dehydrogenase; K00018 glycerate dehydrogenase [EC:1.1.1.29] [KO:K00018] [EC:1.1.1.29]
blr7830	hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81] [KO:K00050] [EC:1.1.1.81]
bll6710	dehydrogenase; K12972 gyoxylate/hydroxypyruvate reductase A [EC:1.1.1.79 1.1.1.81] [KO:K12972] [EC:1.1.1.81 1.1.1.79]
blr6570	dehydrogenase; K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
blr2916	tartrate dehydrogenase; K07246 tartrate dehydrogenase/decarboxylase / D-malate dehydrogenase [EC:1.1.1.93 4.1.1.73 1.1.1.83] [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
blr3923	kdgA; KHG-KDPG bifunctional aldolase [KO:K01625] [EC:4.1.3.16 4.1.2.14]
blr0281	oxalate decarboxylase; K01569 oxalate decarboxylase [EC:4.1.1.2] [KO:K01569] [EC:4.1.1.2]
bsl3134	NAD-dependent formate dehydrogenase; K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2] [KO:K00126] [EC:1.2.1.2]
blr2317	formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
bll5478	formate dehydrogenase; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
bll3136	fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.2.1.2]
bll5476	formate dehydrogenase iron-sulfur subunit; K00124 formate dehydrogenase, beta subunit [KO:K00124]
bll3137	nuoF; NADH dehydrogenase I subunit F [KO:K00124]
bll5475	formate dehydrogenase; K00127 formate dehydrogenase, gamma subunit [KO:K00127]
bll3138	nuoE; formate dehydrogenase subunit gamma [KO:K00127]
bll5955	purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
blr0972	amidase; K01455 formamidase [EC:3.5.1.49] [KO:K01455] [EC:3.5.1.49]
blr6144	amiF; formamidase [KO:K01455] [EC:3.5.1.49]
blr3549	N; K03418 N,N-dimethylformamidase [EC:3.5.1.56] [KO:K03418] [EC:3.5.1.56]
blr3932	N; K03418 N,N-dimethylformamidase [EC:3.5.1.56] [KO:K03418] [EC:3.5.1.56]
bll3157	oxc; oxalyl-CoA decarboxylase [KO:K01577] [EC:4.1.1.8]

Compound

C00007	Oxygen
C00011	CO2
C00014	NH3
C00022	Pyruvate
C00024	Acetyl-CoA
C00025	L-Glutamate
C00026	2-Oxoglutarate
C00027	Hydrogen peroxide
C00036	Oxaloacetate
C00037	Glycine
C00042	Succinate
C00048	Glyoxylate
C00058	Formate
C00064	L-Glutamine
C00065	L-Serine
C00091	Succinyl-CoA
C00100	Propanoyl-CoA
C00136	Butanoyl-CoA
C00149	(S)-Malate
C00158	Citrate
C00160	Glycolate
C00168	Hydroxypyruvate
C00197	3-Phospho-D-glycerate
C00209	Oxalate
C00258	D-Glycerate
C00266	Glycolaldehyde
C00311	Isocitrate
C00313	Oxalyl-CoA
C00332	Acetoacetyl-CoA
C00417	cis-Aconitate
C00552	meso-Tartaric acid
C00683	(S)-Methylmalonyl-CoA
C00798	Formyl-CoA
C00877	Crotonoyl-CoA
C00888	Pentanoyl-CoA
C00898	(R,R)-Tartaric acid
C00975	Dihydroxyfumarate
C00988	2-Phosphoglycolate
C01127	4-Hydroxy-2-oxoglutarate
C01146	2-Hydroxy-3-oxopropanoate
C01182	D-Ribulose 1,5-bisphosphate
C01213	(R)-Methylmalonyl-CoA
C01380	Ethylene glycol
C01989	3-Ethylmalate
C01990	3-Oxalomalate
C02123	3-Propylmalate
C02405	Formyl phosphate
C03217	2-Hydroxy-3-oxoadipate
C03459	2-Hydroxy-3-oxosuccinate
C03548	trans-2,3-Epoxysuccinate
C03561	(R)-3-Hydroxybutanoyl-CoA
C04348	(3S)-3-Carboxy-3-hydroxypropanoyl-CoA
C06027	L-erythro-3-Methylmalyl-CoA
C06028	Mesaconyl-CoA
C06049	N-Formylderivatives
C18026	(2S)-Ethylmalonyl-CoA
C18324	(2S)-Methylsuccinyl-CoA
C20238	(2R)-Ethylmalonyl-CoA

Reference

PMID:10978349 (EC5.3.1.22)

Authors

Njau RK, Herndon CA, Hawes JW.

Title

Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.

Journal

J Biol Chem 275:38780-6 (2000)

Reference

PMID:18065535

Authors

Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G

Title

Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.

Journal

J Bacteriol 190:1366-74 (2008)

Reference

PMID:18819910

Authors

Erb TJ, Retey J, Fuchs G, Alber BE

Title

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Journal

J Biol Chem 283:32283-93 (2008)

KO pathway

ko00630

All links

Pathway (2)   
   KEGG MODULE (1)   
   BioSystems (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (75)   
   KEGG GENES (75)   
All databases (78)   

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