KEGG   PATHWAY: chr00020
Entry
chr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia psittaci RD1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chr00020  Citrate cycle (TCA cycle)
chr00020

Module
chr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chr00020]
chr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chr00020]
Other DBs
GO: 0006099
Organism
Chlamydia psittaci RD1 [GN:chr]
Gene
Cpsi_4121  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Cpsi_2311  putative lipoyl transferase protein [KO:K00658] [EC:2.3.1.61]
Cpsi_4131  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Cpsi_9191  pdhD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Cpsi_7711  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
Cpsi_7721  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
Cpsi_9541  sdhA; putative succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Cpsi_9531  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Cpsi_9551  sdhC; putative succinate dehydrogenase subunit [KO:K00241]
Cpsi_7331  fumR; probable fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Cpsi_7181  putative NADP-dependent malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Cpsi_9011  putative phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
Cpsi_4701  pdhA; pyruvate dehydrogenase e1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Cpsi_4691  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
Cpsi_4681  pdhC; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chr00010  Glycolysis / Gluconeogenesis
chr00061  Fatty acid biosynthesis
chr00190  Oxidative phosphorylation
chr00250  Alanine, aspartate and glutamate metabolism
chr00280  Valine, leucine and isoleucine degradation
chr00470  D-Amino acid metabolism
chr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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