KEGG   PATHWAY: cno00020
Entry
cno00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Clostridium novyi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cno00020  Citrate cycle (TCA cycle)
cno00020

Module
cno_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cno00020]
cno_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cno00020]
Other DBs
GO: 0006099
Organism
Clostridium novyi [GN:cno]
Gene
NT01CX_0234  citrate synthase I [KO:K01647] [EC:2.3.3.1]
NT01CX_0140  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
NT01CX_0139  isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
NT01CX_2052  fumarase [KO:K01677] [EC:4.2.1.2]
NT01CX_2053  fumarate hydratase, class I [KO:K01678] [EC:4.2.1.2]
NT01CX_0659  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
NT01CX_0145  pyruvate synthase subunit porA [KO:K00169] [EC:1.2.7.1]
NT01CX_0144  porB; pyruvate synthase subunit porB [KO:K00170] [EC:1.2.7.1]
NT01CX_0147  porG; pyruvate synthase subunit porC [KO:K00172] [EC:1.2.7.1]
NT01CX_0146  porD; pyruvate synthase subunit porD [KO:K00171] [EC:1.2.7.1]
NT01CX_1854  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cno00010  Glycolysis / Gluconeogenesis
cno00061  Fatty acid biosynthesis
cno00071  Fatty acid degradation
cno00190  Oxidative phosphorylation
cno00220  Arginine biosynthesis
cno00250  Alanine, aspartate and glutamate metabolism
cno00280  Valine, leucine and isoleucine degradation
cno00350  Tyrosine metabolism
cno00470  D-Amino acid metabolism
cno00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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