KEGG   PATHWAY: cpsw00020
Entry
cpsw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chlamydia psittaci WC
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cpsw00020  Citrate cycle (TCA cycle)
cpsw00020

Module
cpsw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cpsw00020]
cpsw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cpsw00020]
Other DBs
GO: 0006099
Organism
Chlamydia psittaci WC [GN:cpsw]
Gene
B603_0464  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
B603_0247  2-oxoacid dehydrogenases acyltransferase family protein [KO:K00658] [EC:2.3.1.61]
B603_0465  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
B603_1007  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
B603_0842  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
B603_0843  sucC; succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
B603_1045  sdhA; succinate dehydrogenase/fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
B603_1044  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
B603_1046  putative membrane protein [KO:K00241]
B603_0804  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
B603_0789  malate dehydrogenase family protein [KO:K00024] [EC:1.1.1.37]
B603_0988  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
B603_0529  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
B603_0528  pdhB; pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
B603_0527  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cpsw00010  Glycolysis / Gluconeogenesis
cpsw00061  Fatty acid biosynthesis
cpsw00190  Oxidative phosphorylation
cpsw00250  Alanine, aspartate and glutamate metabolism
cpsw00280  Valine, leucine and isoleucine degradation
cpsw00470  D-Amino acid metabolism
cpsw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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