KEGG   PATHWAY: csk00020
Entry
csk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cronobacter sakazakii ES15
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csk00020  Citrate cycle (TCA cycle)
csk00020

Module
csk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csk00020]
csk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csk00020]
csk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csk00020]
csk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csk00020]
csk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csk00020]
Other DBs
GO: 0006099
Organism
Cronobacter sakazakii ES15 [GN:csk]
Gene
ES15_2709  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ES15_1801  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ES15_3202  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ES15_2352  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ES15_2704  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ES15_2703  sucB; dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ES15_3206  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ES15_2701  sucD; succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
ES15_2702  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ES15_2706  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ES15_2705  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
ES15_2708  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
ES15_2707  sdhD; succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
ES15_0471  frdA; fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
ES15_0470  frdB; fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
ES15_0469  frdC; fumarate reductase subunit C [KO:K00246]
ES15_0468  frdD; fumarate reductase subunit D [KO:K00247]
ES15_2119  fumA; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
ES15_2118  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ES15_3571  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ES15_3733  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ES15_0266  pckA; phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
ES15_3208  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
ES15_3207  aceF; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
ES15_1868  nifJ; putative pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csk00010  Glycolysis / Gluconeogenesis
csk00053  Ascorbate and aldarate metabolism
csk00061  Fatty acid biosynthesis
csk00071  Fatty acid degradation
csk00190  Oxidative phosphorylation
csk00220  Arginine biosynthesis
csk00250  Alanine, aspartate and glutamate metabolism
csk00280  Valine, leucine and isoleucine degradation
csk00350  Tyrosine metabolism
csk00470  D-Amino acid metabolism
csk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system