KEGG   PATHWAY: ctt00020
Entry
ctt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Comamonas thiooxydans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ctt00020  Citrate cycle (TCA cycle)
ctt00020

Module
ctt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ctt00020]
ctt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ctt00020]
ctt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ctt00020]
ctt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ctt00020]
ctt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ctt00020]
Other DBs
GO: 0006099
Organism
Comamonas thiooxydans [GN:ctt]
Gene
CtCNB1_3351  citrate synthase I [KO:K01647] [EC:2.3.3.1]
CtCNB1_3395  citrate synthase I [KO:K01647] [EC:2.3.3.1]
CtCNB1_3356  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CtCNB1_3357  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CtCNB1_3384  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CtCNB1_2811  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CtCNB1_2815  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
CtCNB1_2132  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
CtCNB1_2133  2-oxoglutarate dehydrogenase, E2 subunit [KO:K00658] [EC:2.3.1.61]
CtCNB1_2134  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CtCNB1_2250  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CtCNB1_4774  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
CtCNB1_4775  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
CtCNB1_0236  acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
CtCNB1_0090  acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
CtCNB1_3392  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CtCNB1_3393  succinate dehydrogenase and fumarate reductase [KO:K00240] [EC:1.3.5.1]
CtCNB1_3390  succinate dehydrogenase, cytochrome b subunit [KO:K00241]
CtCNB1_3391  succinate dehydrogenase, cytochrome b subunit [KO:K00242]
CtCNB1_1380  hydro-lyase, Fe-S type, tartrate/fumarate [KO:K01676] [EC:4.2.1.2]
CtCNB1_1382  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CtCNB1_3388  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CtCNB1_3636  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CtCNB1_0071  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CtCNB1_2247  2-oxo-acid dehydrogenase E1 subunit [KO:K00163] [EC:1.2.4.1]
CtCNB1_2248  pyruvate dehydrogenase complex dihydrolipoamide [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ctt00010  Glycolysis / Gluconeogenesis
ctt00053  Ascorbate and aldarate metabolism
ctt00061  Fatty acid biosynthesis
ctt00071  Fatty acid degradation
ctt00190  Oxidative phosphorylation
ctt00220  Arginine biosynthesis
ctt00250  Alanine, aspartate and glutamate metabolism
ctt00280  Valine, leucine and isoleucine degradation
ctt00350  Tyrosine metabolism
ctt00470  D-Amino acid metabolism
ctt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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