KEGG   PATHWAY: dac00920
Entry
dac00920                    Pathway                                
Name
Sulfur metabolism - Delftia acidovorans
Description
Sulfur is an essential element for life and the metabolism of organic sulfur compounds plays an important role in the global sulfur cycle. Sulfur occurs in various oxidation states ranging from +6 in sulfate to -2 in sulfide (H2S). Sulfate reduction can occur in both an energy consuming assimilatory pathway and an energy producing dissimilatory pathway. The assimilatory pathway, which is found in a wide range of organisms, produces reduced sulfur compounds for the biosynthesis of S-containing amino acids and does not lead to direct excretion of sulfide. In the dissimilatory pathway, which is restricted to obligatory anaerobic bacterial and archaeal lineages, sulfate (or sulfur) is the terminal electron acceptor of the respiratory chain producing large quantities of inorganic sulfide. Both pathways start from the activation of sulfate by reaction with ATP to form adenylyl sulfate (APS). In the assimilatory pathway [MD:M00176] APS is converted to 3'-phosphoadenylyl sulfate (PAPS) and then reduced to sulfite, and sulfite is further reduced to sulfide by the assimilatory sulfite reductase. In the dissimilatory pathway [MD:M00596] APS is directly reduced to sulfite, and sulfite is further reduced to sulfide by the dissimilatory sulfite reductase. The capacity for oxidation of sulfur is quite widespread among bacteria and archaea, comprising phototrophs and chemolithoautotrophs. The SOX (sulfur-oxidation) system [MD:M00595] is a well-known sulfur oxidation pathway and is found in both photosynthetic and non-photosynthetic sulfur-oxidizing bacteria. Green sulfur bacteria and purple sulfur bacteria carry out anoxygenic photosynthesis with reduced sulfur compounds such as sulfide and elemental sulfur, as well as thiosulfate (in some species with the SOX system), as the electron donor for photoautotrophic growth. In some chemolithoautotrophic sulfur oxidizers (such as Thiobacillus denitrificans), it has been suggested that dissimilatory sulfur reduction enzymes operate in the reverse direction, forming a sulfur oxidation pathway from sulfite to APS and then to sulfate.
Class
Metabolism; Energy metabolism
Pathway map
dac00920  Sulfur metabolism
dac00920

Module
dac_M00021  Cysteine biosynthesis, serine => cysteine [PATH:dac00920]
dac_M00176  Assimilatory sulfate reduction, sulfate => H2S [PATH:dac00920]
Other DBs
GO: 0006790
Organism
Delftia acidovorans [GN:dac]
Gene
Daci_4590  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K02048]
Daci_4641  sulfate ABC transporter, periplasmic sulfate-binding protein [KO:K23163]
Daci_4589  sulfate ABC transporter, inner membrane subunit CysT [KO:K02046]
Daci_4588  sulfate ABC transporter, inner membrane subunit CysW [KO:K02047]
Daci_4587  sulfate ABC transporter, ATPase subunit [KO:K02045] [EC:7.3.2.3]
Daci_4640  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Daci_4639  aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein [KO:K15553]
Daci_4416  Substrate-binding region of ABC-type glycine betaine transport system [KO:K15553]
Daci_4899  twin-arginine translocation pathway signal [KO:K15553]
Daci_5617  ABC-type nitrate/sulfonate/bicarbonate transport system periplasmic component [KO:K15553]
Daci_4637  binding-protein-dependent transport systems inner membrane component [KO:K15554]
Daci_5618  binding-protein-dependent transport systems inner membrane component [KO:K15554]
Daci_4636  ABC transporter related [KO:K15555] [EC:7.6.2.14]
Daci_4418  ABC transporter related [KO:K15555] [EC:7.6.2.14]
Daci_5619  ABC transporter related [KO:K15555] [EC:7.6.2.14]
Daci_4638  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Daci_1771  Alkanesulfonate monooxygenase [KO:K04091] [EC:1.14.14.5 1.14.14.34]
Daci_2548  FMN reductase [KO:K00299] [EC:1.5.1.38]
Daci_1774  FMN reductase [KO:K00299] [EC:1.5.1.38]
Daci_4656  sulfate adenylyltransferase, large subunit [KO:K00956] [EC:2.7.7.4]
Daci_4655  Sulfate adenylyltransferase [KO:K00957] [EC:2.7.7.4]
Daci_3191  Adenylyl-sulfate kinase [KO:K00860] [EC:2.7.1.25]
Daci_4654  Phosphoadenylyl-sulfate reductase (thioredoxin) [KO:K00390] [EC:1.8.4.8 1.8.4.10]
Daci_0055  oxidoreductase molybdopterin binding [KO:K00387] [EC:1.8.3.1]
Daci_0530  flavodoxin/nitric oxide synthase [KO:K00380] [EC:1.8.1.2]
Daci_5053  flavodoxin/nitric oxide synthase [KO:K00380] [EC:1.8.1.2]
Daci_4652  nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein [KO:K00381] [EC:1.8.1.2]
Daci_2338  FAD-dependent pyridine nucleotide-disulphide oxidoreductase [KO:K17218] [EC:1.8.5.4]
Daci_4246  molydopterin dinucleotide-binding region [KO:K08357]
Daci_4244  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K08358]
Daci_4245  Polysulphide reductase NrfD [KO:K08359]
Daci_2237  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Daci_2561  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Daci_5151  Rhodanese domain protein [KO:K01011] [EC:2.8.1.1 2.8.1.2]
Daci_2311  serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Daci_5789  Serine O-acetyltransferase [KO:K00640] [EC:2.3.1.30]
Daci_1442  cysteine synthase [KO:K01738] [EC:2.5.1.47]
Daci_5156  Pyridoxal-5'-phosphate-dependent protein beta subunit [KO:K01738] [EC:2.5.1.47]
Daci_6044  homoserine O-acetyltransferase [KO:K00641] [EC:2.3.1.31 2.3.1.46]
Daci_4768  O-succinylhomoserine sulfhydrylase [KO:K10764] [EC:2.5.1.-]
Daci_3306  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
Daci_4824  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
Daci_5039  AMP-dependent synthetase and ligase [KO:K20034] [EC:6.2.1.44]
Daci_2393  acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
Daci_1337  acyl-CoA dehydrogenase domain protein [KO:K20035] [EC:1.3.99.41]
Compound
C00033  Acetate
C00042  Succinate
C00053  3'-Phosphoadenylyl sulfate
C00054  Adenosine 3',5'-bisphosphate
C00059  Sulfate
C00065  L-Serine
C00084  Acetaldehyde
C00087  Sulfur
C00094  Sulfite
C00097  L-Cysteine
C00155  L-Homocysteine
C00224  Adenylyl sulfate
C00245  Taurine
C00263  L-Homoserine
C00283  Hydrogen sulfide
C00320  Thiosulfate
C00409  Methanethiol
C00580  Dimethyl sulfide
C00979  O-Acetyl-L-serine
C01118  O-Succinyl-L-homoserine
C01861  Trithionate
C02084  Tetrathionate
C03920  2-(Methylthio)ethanesulfonate
C04022  S,S-Dimethyl-beta-propiothetin
C08276  3-(Methylthio)propanoate
C11142  Dimethyl sulfone
C11143  Dimethyl sulfoxide
C11145  Methanesulfonic acid
C15521  Alkanesulfonate
C17267  S-Sulfanylglutathione
C19692  Polysulfide
C20870  3-(Methylthio)propanoyl-CoA
C20955  3-(Methylthio)acryloyl-CoA
C22834  Protein-trisulfide
Reference
  Authors
Grein F, Ramos AR, Venceslau SS, Pereira IA
  Title
Unifying concepts in anaerobic respiration: Insights from dissimilatory sulfur metabolism.
  Journal
Biochim Biophys Acta 1827:145-60 (2013)
DOI:10.1016/j.bbabio.2012.09.001
Reference
  Authors
Fauque GD, Barton LL
  Title
Hemoproteins in dissimilatory sulfate- and sulfur-reducing prokaryotes.
  Journal
Adv Microb Physiol 60:1-90 (2012)
DOI:10.1016/B978-0-12-398264-3.00001-2
Reference
  Authors
Sakurai H, Ogawa T, Shiga M, Inoue K
  Title
Inorganic sulfur oxidizing system in green sulfur bacteria.
  Journal
Photosynth Res 104:163-76 (2010)
DOI:10.1007/s11120-010-9531-2
Reference
  Authors
Falkenby LG, Szymanska M, Holkenbrink C, Habicht KS, Andersen JS, Miller M, Frigaard NU
  Title
Quantitative proteomics of Chlorobaculum tepidum: insights into the sulfur metabolism of a phototrophic green sulfur bacterium.
  Journal
FEMS Microbiol Lett 323:142-50 (2011)
DOI:10.1111/j.1574-6968.2011.02370.x
Reference
  Authors
Gregersen LH, Bryant DA, Frigaard NU
  Title
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria.
  Journal
Front Microbiol 2:116 (2011)
DOI:10.3389/fmicb.2011.00116
Reference
  Authors
Beller HR, Chain PS, Letain TE, Chakicherla A, Larimer FW, Richardson PM, Coleman MA, Wood AP, Kelly DP.
  Title
The genome sequence of the obligately chemolithoautotrophic, facultatively anaerobic bacterium Thiobacillus denitrificans.
  Journal
J Bacteriol 188:1473-88 (2006)
DOI:10.1128/JB.188.4.1473-1488.2006
Reference
PMID:9695921
  Authors
Pott AS, Dahl C
  Title
Sirohaem sulfite reductase and other proteins encoded by genes at the dsr locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur.
  Journal
Microbiology 144 ( Pt 7):1881-94 (1998)
DOI:10.1099/00221287-144-7-1881
Reference
  Authors
Frigaard NU, Dahl C
  Title
Sulfur metabolism in phototrophic sulfur bacteria.
  Journal
Adv Microb Physiol 54:103-200 (2009)
DOI:10.1016/S0065-2911(08)00002-7
Related
pathway
dac00260  Glycine, serine and threonine metabolism
dac00270  Cysteine and methionine metabolism
dac00680  Methane metabolism
KO pathway
ko00920   

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