KEGG   PATHWAY: dai03430
Entry
dai03430                    Pathway                                
Name
Mismatch repair - Desulfosporosinus acidiphilus
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
dai03430  Mismatch repair
dai03430

Other DBs
GO: 0006298
Organism
Desulfosporosinus acidiphilus [GN:dai]
Gene
Desaci_2911  DNA mismatch repair protein MutS [KO:K03555]
Desaci_0160  MutS2 family protein [KO:K07456]
Desaci_0380  MutS domain V [KO:K07456]
Desaci_2908  DNA mismatch repair protein MutL [KO:K03572]
Desaci_1209  ATP-dependent DNA helicase PcrA [KO:K03657] [EC:5.6.2.4]
Desaci_1003  DNA/RNA helicase, superfamily I [KO:K03657] [EC:5.6.2.4]
Desaci_3337  Exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
Desaci_3336  Exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
Desaci_3472  exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
Desaci_4695  single stranded DNA-binding protein [KO:K03111]
Desaci_4741  single-stranded DNA-binding protein [KO:K03111]
Desaci_1768  DNA-directed DNA polymerase III PolC [KO:K02337] [EC:2.7.7.7]
Desaci_0821  DNA polymerase III, alpha chain [KO:K03763] [EC:2.7.7.7]
Desaci_0003  DNA polymerase III, beta subunit [KO:K02338] [EC:2.7.7.7]
Desaci_0020  DNA polymerase III, subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
Desaci_4044  DNA polymerase III, delta subunit [KO:K02340] [EC:2.7.7.7]
Desaci_0031  DNA polymerase III, delta prime subunit [KO:K02341] [EC:2.7.7.7]
Desaci_0365  DNA polymerase III epsilon subunit-like 3'-5' exonuclease [KO:K02342] [EC:2.7.7.7]
Desaci_1211  DNA ligase, NAD-dependent [KO:K01972] [EC:6.5.1.2]
Desaci_4119  DNA adenine methylase Dam [KO:K06223] [EC:2.1.1.72]
Desaci_1385  DNA adenine methylase Dam [KO:K06223] [EC:2.1.1.72]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   

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