KEGG   PATHWAY: dak00630Help
Entry
dak00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Desulfurivibrio alkaliphilus
Class
Metabolism; Carbohydrate metabolism
BRITE hierarchy
Pathway map
Glyoxylate and dicarboxylate metabolism
dak00630

All organismsOrtholog table
Module
Glyoxylate cycle [PATH:dak00630]
Ethylmalonyl pathway [PATH:dak00630]
Photorespiration [PATH:dak00630]
Organism
Desulfurivibrio alkaliphilus [GN:dak]
Gene
malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] [KO:K00024] [EC:1.1.1.37]
citrate synthase I; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
aconitate hydratase; K01681 aconitate hydratase 1 / homoaconitase [EC:4.2.1.3 4.2.1.-] [KO:K01681] [EC:4.2.1.- 4.2.1.3]
FAD linked oxidase domain protein; K00104 glycolate oxidase [EC:1.1.3.15] [KO:K00104] [EC:1.1.3.15]
hypothetical protein; K11473 glycolate oxidase iron-sulfur subunit [KO:K11473]
glutamine synthetase catalytic region; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
Glycine hydroxymethyltransferase; K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] [KO:K00600] [EC:2.1.2.1]
formate dehydrogenase; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
molybdopterin oxidoreductase; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
molybdopterin oxidoreductase Fe4S4 region; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
Nitrate reductase; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
4Fe-4S ferredoxin iron-sulfur binding domain protein; K00124 formate dehydrogenase, beta subunit [KO:K00124]
formate dehydrogenase; K00127 formate dehydrogenase, gamma subunit [KO:K00127]
Compound
C00007  
Oxygen
C00011  
CO2
C00014  
NH3
C00022  
Pyruvate
C00024  
Acetyl-CoA
C00025  
L-Glutamate
C00026  
2-Oxoglutarate
C00027  
Hydrogen peroxide
C00036  
Oxaloacetate
C00037  
Glycine
C00042  
Succinate
C00048  
Glyoxylate
C00058  
Formate
C00064  
L-Glutamine
C00065  
L-Serine
C00091  
Succinyl-CoA
C00100  
Propanoyl-CoA
C00136  
Butanoyl-CoA
C00149  
(S)-Malate
C00158  
Citrate
C00160  
Glycolate
C00168  
Hydroxypyruvate
C00197  
3-Phospho-D-glycerate
C00209  
Oxalate
C00258  
D-Glycerate
C00266  
Glycolaldehyde
C00311  
Isocitrate
C00313  
Oxalyl-CoA
C00332  
Acetoacetyl-CoA
C00417  
cis-Aconitate
C00552  
meso-Tartaric acid
C00683  
(S)-Methylmalonyl-CoA
C00798  
Formyl-CoA
C00877  
Crotonoyl-CoA
C00888  
Pentanoyl-CoA
C00898  
(R,R)-Tartaric acid
C00975  
Dihydroxyfumarate
C00988  
2-Phosphoglycolate
C01127  
4-Hydroxy-2-oxoglutarate
C01146  
2-Hydroxy-3-oxopropanoate
C01182  
D-Ribulose 1,5-bisphosphate
C01213  
(R)-Methylmalonyl-CoA
C01380  
Ethylene glycol
C01989  
3-Ethylmalate
C01990  
3-Oxalomalate
C02123  
3-Propylmalate
C02405  
Formyl phosphate
C03217  
2-Hydroxy-3-oxoadipate
C03459  
2-Hydroxy-3-oxosuccinate
C03548  
trans-2,3-Epoxysuccinate
C03561  
(R)-3-Hydroxybutanoyl-CoA
C04348  
(3S)-3-Carboxy-3-hydroxypropanoyl-CoA
C06027  
L-erythro-3-Methylmalyl-CoA
C06028  
Mesaconyl-CoA
C06049  
N-Formylderivatives
C18026  
(2S)-Ethylmalonyl-CoA
C18324  
(2S)-Methylsuccinyl-CoA
C20238  
(2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
KO pathway
 
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