KEGG   PATHWAY: dol00020
Entry
dol00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Desulfosudis oleivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dol00020  Citrate cycle (TCA cycle)
dol00020

Module
dol_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dol00020]
dol_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dol00020]
dol_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dol00020]
dol_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dol00020]
Other DBs
GO: 0006099
Organism
Desulfosudis oleivorans [GN:dol]
Gene
Dole_0026  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Dole_1063  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
Dole_1003  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Dole_1908  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Dole_3021  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Dole_1065  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Dole_3020  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Dole_1066  pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Dole_3019  2-oxoglutarate synthase [KO:K00177] [EC:1.2.7.3]
Dole_3022  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Dole_0073  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Dole_0074  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Dole_1556  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Dole_1557  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00240] [EC:1.3.5.1]
Dole_1555  succinate dehydrogenase or fumarate reductase cytochrome b subunit, b558 family [KO:K00241]
Dole_0693  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Dole_2374  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Dole_0075  Conserved carboxylase region [KO:K01960] [EC:6.4.1.1]
Dole_0376  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Dole_1392  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00169] [EC:1.2.7.1]
Dole_1391  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00170] [EC:1.2.7.1]
Dole_1394  pyruvate/ketoisovalerate oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
Dole_1393  pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Dole_1453  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dol00010  Glycolysis / Gluconeogenesis
dol00053  Ascorbate and aldarate metabolism
dol00061  Fatty acid biosynthesis
dol00071  Fatty acid degradation
dol00190  Oxidative phosphorylation
dol00220  Arginine biosynthesis
dol00250  Alanine, aspartate and glutamate metabolism
dol00280  Valine, leucine and isoleucine degradation
dol00350  Tyrosine metabolism
dol00470  D-Amino acid metabolism
dol00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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