KEGG   PATHWAY: dvi03030
Entry
dvi03030                    Pathway                                
Name
DNA replication - Drosophila virilis
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
dvi03030  DNA replication
dvi03030

Organism
Drosophila virilis [GN:dvi]
Gene
6629865  single-stranded DNA-binding protein, mitochondrial [KO:K03111]
6631217  replication protein A 70 kDa DNA-binding subunit [KO:K07466]
6628331  proliferating cell nuclear antigen [KO:K04802]
6625070  proliferating cell nuclear antigen [KO:K04802]
6628015  DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
6625290  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
6632863  DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
6633062  DNA polymerase alpha subunit B [KO:K02321]
6624660  DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
6624697  DNA primase large subunit [KO:K02685]
6622110  DNA polymerase delta catalytic subunit [KO:K02327] [EC:2.7.7.7]
6636850  DNA polymerase delta small subunit [KO:K02328]
6630925  DNA polymerase epsilon catalytic subunit A [KO:K02324] [EC:2.7.7.7]
6624704  DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
6634381  DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
6630519  DNA replication licensing factor Mcm2 [KO:K02540] [EC:5.6.2.3]
6636059  DNA replication licensing factor Mcm3 [KO:K02541] [EC:5.6.2.3]
6624816  DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
6633167  DNA replication licensing factor Mcm5 [KO:K02209] [EC:5.6.2.3]
6633552  DNA replication licensing factor Mcm6 [KO:K02542] [EC:5.6.2.3]
6623579  DNA replication licensing factor Mcm7 [KO:K02210] [EC:5.6.2.3]
6628593  replication protein A 32 kDa subunit [KO:K10739]
6631442  replication protein A 14 kDa subunit A [KO:K10740]
6632640  replication factor C subunit 1 [KO:K10754]
6629872  replication factor C subunit 4 [KO:K10755]
6622198  replication factor C subunit 2 [KO:K10755]
6627740  replication factor C subunit 3 [KO:K10756]
6628046  replication factor C subunit 5 [KO:K10756]
6627598  ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
6625814  ribonuclease H2 subunit B [KO:K10744]
6627225  uncharacterized protein LOC6627225 [KO:K10745]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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