KEGG   PATHWAY: eta00020
Entry
eta00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Erwinia tasmaniensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eta00020  Citrate cycle (TCA cycle)
eta00020

Module
eta_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eta00020]
eta_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eta00020]
eta_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eta00020]
eta_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eta00020]
eta_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eta00020]
Other DBs
GO: 0006099
Organism
Erwinia tasmaniensis [GN:eta]
Gene
ETA_23090  gltA; Citrate synthase [KO:K01647] [EC:2.3.3.1]
ETA_16160  acnA; Aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
ETA_08280  acnB; Aconitate hydratase 2 (Citrate hydro-lyase 2) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ETA_19490  icd; Isocitrate dehydrogenase [NADP] [KO:K00031] [EC:1.1.1.42]
ETA_23040  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ETA_23030  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
ETA_08160  lpdA; pyruvate dehydrogenase multienzyme complex, Dihydrolipoamide dehydrogenase component [KO:K00382] [EC:1.8.1.4]
ETA_23010  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
ETA_23020  sucC; Succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
ETA_23060  sdhA; Succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ETA_23050  sdhB; Succinate dehydrogenase, iron sulfur protein [KO:K00240] [EC:1.3.5.1]
ETA_23080  sdhC; Succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
ETA_23070  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
ETA_19280  fumA; Fumarase A [KO:K01676] [EC:4.2.1.2]
ETA_17630  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
ETA_02980  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ETA_01050  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ETA_17080  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ETA_32170  pckA; Phosphoenolpyruvate carboxykinase (PEP carboxykinase) [KO:K01610] [EC:4.1.1.49]
ETA_08140  aceE; Pyruvate dehydrogenase, E1 component [KO:K00163] [EC:1.2.4.1]
ETA_08150  aceF; Probable pyruvate dehydrogenase multienzyme complex, dihydrolipoamide acetyltransferase component(E2) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eta00010  Glycolysis / Gluconeogenesis
eta00053  Ascorbate and aldarate metabolism
eta00061  Fatty acid biosynthesis
eta00071  Fatty acid degradation
eta00190  Oxidative phosphorylation
eta00220  Arginine biosynthesis
eta00250  Alanine, aspartate and glutamate metabolism
eta00280  Valine, leucine and isoleucine degradation
eta00350  Tyrosine metabolism
eta00470  D-Amino acid metabolism
eta00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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