| Entry |
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| Name |
Carotenoid biosynthesis - Halothece sp. PCC 7418
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| Class |
Metabolism; Metabolism of terpenoids and polyketides
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| Pathway map |

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| Other DBs |
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| Organism |
Halothece sp. PCC 7418 [GN: hao]
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| Gene |
| | | three-step phytoene desaturase; K02293 15-cis-phytoene desaturase [EC: 1.3.5.5] [KO: K02293] [EC: 1.3.5.5] | | | | | | hypothetical protein; K14605 lycopene cyclase CruA [KO: K14605] | | FAD dependent oxidoreductase; K14606 lycopene cyclase CruP [KO: K14606] | | fatty acid desaturase; K02294 beta-carotene hydroxylase [EC:1.14.13.-] [KO: K02294] [EC:1.14.13.-] | | UDP-galactopyranose mutase; K09879 isorenieratene synthase [KO: K09879] |
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| Compound |
| Geranylgeranyl diphosphate | | trans,trans-Farnesyl diphosphate | | beta-Carotene | | Prephytoene diphosphate | | Presqualene diphosphate | | all-trans-Phytoene | | all-trans-Phytofluene | | 15-cis-Phytoene | | all-trans-zeta-Carotene | | all-trans-Neurosporene | | Lycopene | | alpha-Carotene | | beta-Zeacarotene | | gamma-Carotene | | Abscisate | | Zeaxanthin | | Antheraxanthin | | Astaxanthin | | Canthaxanthin | | Capsanthin | | Capsorubin | | delta-Carotene | | Zeinoxanthin | | beta-Cryptoxanthin | | Echinenone | | Lutein | | Neoxanthin | | Violaxanthin | | Strigol | | Phaseic acid | | 9'-cis-Neoxanthin | | 9-cis-Violaxanthin | | Xanthoxin | | Xanthoxic acid | | Abscisic aldehyde | | Abscisic alcohol | | 8'-Hydroxyabscisate | | 9,9'-dicis-zeta-Carotene | | 7,9,7',9'-tetracis-Lycopene | | 1'-Hydroxy-gamma-carotene | | 1'-Hydroxytorulene | | 1'-Hydroxy-gamma-carotene glucoside | | 1'-Hydroxy-gamma-carotene glucoside ester | | 3,4-Dehydrolycopene | | 3,4-Dehydrorhodopin | | Anhydrorhodovibrin | | Rhodovibrin | | Hydroxyspirilloxanthin | | Spirilloxanthin | | 2-Ketospirilloxanthin | | 2,2'-Diketospirilloxanthin | | 3,4-Dihydroanhydrorhodovibrin | | 3',4'-Dihydrorhodovibrin | | 3,4,3',4'-Tetrahydrospirilloxanthin | | Chloroxanthin | | 3,4-Dihydrospheroidene | | Demethylspheroidene | | Spheroidene | | Hydroxyspheroidene | | Spheroidenone | | Hydroxyspheroidenone | | Chlorobactene | | Hydroxychlorobactene | | Hydroxychlorobactene glucoside | | Hydroxychlorobactene glucoside ester | | (2'S)-Deoxymyxol 2'-(2,4-di-O-methyl-alpha-L-fucoside) | | (3R,2'S)-Myxol 2'-(2,4-di-O-methyl-alpha-L-fucoside) | | (2'S)-Deoxymyxol 2'-alpha-L-fucoside | | (3R,2'S)-Myxol 2'-alpha-L-fucoside | | (3S,2'S)-4-Ketomyxol 2'-alpha-L-fucoside | | Isorenieratene | | 3'-Hydroxyechinenone | | 3-Hydroxyechinenone | | Phoenicoxanthin | | Adonixanthin | | Zeaxanthin diglucoside | | Abscisic acid glucose ester | | Dihydrophaseic acid | | alpha-Cryptoxanthin | | Thermocryptoxanthin | | Thermozeaxanthin | | Thermobiszeaxanthin | | 4,4'-Diapophytoene | | 4,4'-Diaponeurosporene | | 4,4'-Diaponeurosporenic acid | | Glycosyl-4,4'-diaponeurosporenoate | | Staphyloxanthin | | Rhodopinal | | Rhodopinal glucoside | | (2S,2'S)-Oscillol | | (2S,2'S)-Oscillol 2,2'-di(alpha-L-fucoside) | | epsilon-Carotene | | R.g.-Keto I | | R.g.-Keto III | | Thiothece-474 | | Okenone | | Caloxanthin | | Nostoxanthin | | 7,8-Dihydro-beta-carotene | | beta-Isorenieratene | | Astaxanthin diester | | Strigolactone ABC-rings | | 5-Deoxystrigol | | 7,9,9'-tricis-Neurosporene | | 9,15,9'-tricis-zeta-Carotene | | 15,9'-dicis-Phytofluene | | 1-Hydroxy-1,2-dihydrolycopene | | 4,4'-Diapolycopene | | 4,4'-Diapolycopenedial |
|
| Reference |
|
| Authors |
Takaichi S, Mimuro M, Tomita Y. |
| Title |
[Karotenoido-sono Tayousei to Seirikattsei] (In Japanese) |
| Journal |
SHOKABO:109-156 (2006) |
| Reference |
|
| Authors |
Fukuda H, Matida Y, Kamiya Y, Kakimoto T. |
| Title |
[Shinpan Syokubutuhorumon no Sigunarudentatu] (In Japanese) |
| Journal |
Syujyunsya:165-186 (2004) |
| Reference |
|
| Authors |
Takaichi S. |
| Title |
Distribution and biosynthesis of carotenoids in plants and photosynthetic bacteria. |
| Journal |
Foods and Food Ingredients Journal of Japan 212-7:524-531 (2007) |
| Reference |
PMID: 11804826 (Plant-Carotenoid pathway) |
| Authors |
Seo M, Koshiba T. |
| Title |
Complex regulation of ABA biosynthesis in plants. |
| Journal |
Trends Plant Sci 7:41-8 (2002) |
| Reference |
PMID: 17085635 (Plant-Carotenoid pathway) |
| Authors |
Cunningham FX Jr, Lee H, Gantt E. |
| Title |
Carotenoid biosynthesis in the primitive red alga Cyanidioschyzon merolae. |
| Journal |
Eukaryot Cell 6:533-45 (2007) |
| Reference |
PMID: 9914519 (Plant-Carotenoid pathway) |
| Authors |
Bartley GE, Scolnik PA, Beyer P. |
| Title |
Two Arabidopsis thaliana carotene desaturases, phytoene desaturase and zeta-carotene desaturase, expressed in Escherichia coli, catalyze a poly-cis pathway to yield pro-lycopene. |
| Journal |
Eur J Biochem 259:396-403 (1999) |
| Reference |
PMID: 11884677 (Plant-Carotenoid pathway) |
| Authors |
Park H, Kreunen SS, Cuttriss AJ, DellaPenna D, Pogson BJ. |
| Title |
Identification of the carotenoid isomerase provides insight into carotenoid biosynthesis, prolamellar body formation, and photomorphogenesis. |
| Journal |
Plant Cell 14:321-32 (2002) |
| Reference |
PMID: 15557094 (Plant-Carotenoid pathway) |
| Authors |
Isaacson T, Ohad I, Beyer P, Hirschberg J. |
| Title |
Analysis in vitro of the enzyme CRTISO establishes a poly-cis-carotenoid biosynthesis pathway in plants. |
| Journal |
Plant Physiol 136:4246-55 (2004) |
| Reference |
PMID: 12782726 (Plant-Carotenoid pathway) |
| Authors |
Tian L, Magallanes-Lundback M, Musetti V, DellaPenna D. |
| Title |
Functional analysis of beta- and epsilon-ring carotenoid hydroxylases in Arabidopsis. |
| Journal |
Plant Cell 15:1320-32 (2003) |
| Reference |
PMID: 14709673 (Plant-Carotenoid pathway) |
| Authors |
Tian L, Musetti V, Kim J, Magallanes-Lundback M, DellaPenna D. |
| Title |
The Arabidopsis LUT1 locus encodes a member of the cytochrome p450 family that is required for carotenoid epsilon-ring hydroxylation activity. |
| Journal |
Proc Natl Acad Sci U S A 101:402-7 (2004) |
| Reference |
PMID: 7920703 (Plant-Carotenoid pathway) |
| Authors |
Bouvier F, Hugueney P, d'Harlingue A, Kuntz M, Camara B. |
| Title |
Xanthophyll biosynthesis in chromoplasts: isolation and molecular cloning of an enzyme catalyzing the conversion of 5,6-epoxycarotenoid into ketocarotenoid. |
| Journal |
Plant J 6:45-54 (1994) |
| Reference |
PMID: 9159947 (Plant-Carotenoid pathway) |
| Authors |
Schwartz SH, Leon-Kloosterziel KM, Koornneef M, Zeevaart JA. |
| Title |
Biochemical characterization of the aba2 and aba3 mutants in Arabidopsis thaliana. |
| Journal |
Plant Physiol 114:161-6 (1997) |
| Reference |
PMID: 12114582 (Plant-Carotenoid pathway) |
| Authors |
Xu ZJ, Nakajima M, Suzuki Y, Yamaguchi I. |
| Title |
Cloning and characterization of the abscisic acid-specific glucosyltransferase gene from adzuki bean seedlings. |
| Journal |
Plant Physiol 129:1285-95 (2002) |
| Reference |
PMID: 9808729 (Plant-Carotenoid pathway) |
| Authors |
Krochko JE, Abrams GD, Loewen MK, Abrams SR, Cutler AJ. |
| Title |
(+)-Abscisic acid 8'-hydroxylase is a cytochrome P450 monooxygenase |
| Journal |
Plant Physiol 118:849-60 (1998) |
| Reference |
PMID: 10851005 (Purple bacteria-canthaxanthin,spirilloxanthin pathway) |
| Authors |
Hannibal L, Lorquin J, D'Ortoli NA, Garcia N, Chaintreuil C, Masson-Boivin C, Dreyfus B, Giraud E. |
| Title |
Isolation and characterization of canthaxanthin biosynthesis genes from the photosynthetic bacterium Bradyrhizobium sp. strain ORS278. |
| Journal |
J Bacteriol 182:3850-3 (2000) |
| Reference |
PMID: 12664193 (Purple bacteria-Spheroidene,spirilloxanthin pathway) |
| Authors |
Pinta V, Ouchane S, Picaud M, Takaichi S, Astier C, Reiss-Husson F. |
| Title |
Characterization of unusual hydroxy- and ketocarotenoids in Rubrivivax gelatinosus: involvement of enzyme CrtF or CrtA. |
| Journal |
Arch Microbiol 179:354-62 (2003) |
| Reference |
PMID: 7721699 (Purple bacteria-Spheroidene pathway) |
| Authors |
Lang HP, Cogdell RJ, Takaichi S, Hunter CN. |
| Title |
Complete DNA sequence, specific Tn5 insertion map, and gene assignment of the carotenoid biosynthesis pathway of Rhodobacter sphaeroides. |
| Journal |
J Bacteriol 177:2064-73 (1995) |
| Reference |
PMID: 9636041 (Purple bacteria-Unusual spirilloxanthin pathway) |
| Authors |
Komori M, Ghosh R, Takaichi S, Hu Y, Mizoguchi T, Koyama Y, Kuki M. |
| Title |
A null lesion in the rhodopin 3,4-desaturase of Rhodospirillum rubrum unmasks a cryptic branch of the carotenoid biosynthetic pathway. |
| Journal |
Biochemistry 37:8987-94 (1998) |
| Reference |
(Purple bacteria-Spirilloxanthin pathway) |
| Authors |
|
| Title |
|
| Journal |
|
| Reference |
PMID: 14044829 (Purple bacteria-Okenone ) |
| Authors |
SCHMIDT K, LIAAENJENSEN S, SCHLEGEL HG. |
| Title |
[CAROTENOIDS IN THIORHODACEAE. I. OKENONEAS THE PRINCIPAL CAROTENOID IN CHROMATIUM OKENII PERTY.] |
| Journal |
Arch Mikrobiol 46:117-26 (1963) |
| Reference |
PMID: 4932469 (Purple bacteria-Rhodopinal ) |
| Authors |
Schmidt K. |
| Title |
Carotenoids of purple nonsulfur bacteria. Composition and biosynthesis of the carotenoids of some strains of Rhodopseudomonas acidophila, Rhodospirillum tenue, and Rhodocyclus purpureus. |
| Journal |
Arch Mikrobiol 77:231-8 (1971) |
| Reference |
PMID: 2254247 (Erwinia uredovora-Carotenoid pathway) |
| Authors |
Misawa N, Nakagawa M, Kobayashi K, Yamano S, Izawa Y, Nakamura K, Harashima K. |
| Title |
Elucidation of the Erwinia uredovora carotenoid biosynthetic pathway by functional analysis of gene products expressed in Escherichia coli. |
| Journal |
J Bacteriol 172:6704-12 (1990) |
| Reference |
PMID: 7588751 (Myxococcus xanthus-Carotenoid pathway) |
| Authors |
Botella JA, Murillo FJ, Ruiz-Vazquez R. |
| Title |
A cluster of structural and regulatory genes for light-induced carotenogenesis in Myxococcus xanthus. |
| Journal |
Eur J Biochem 233:238-48 (1995) |
| Reference |
PMID: 7592436 (Marine bacteria-Astaxanthin pathway) |
| Authors |
Misawa N, Satomi Y, Kondo K, Yokoyama A, Kajiwara S, Saito T, Ohtani T, Miki W. |
| Title |
Structure and functional analysis of a marine bacterial carotenoid biosynthesis gene cluster and astaxanthin biosynthetic pathway proposed at the gene level. |
| Journal |
J Bacteriol 177:6575-84 (1995) |
| Reference |
PMID: 16020541 (Heriobacteria-Diapocarotene pathway) |
| Authors |
Pelz A, Wieland KP, Putzbach K, Hentschel P, Albert K, Gotz F. |
| Title |
Structure and biosynthesis of staphyloxanthin from Staphylococcus aureus. |
| Journal |
J Biol Chem 280:32493-8 (2005) |
| Reference |
PMID: 8002598 (Heriobacteria-Diapocarotene pathway) |
| Authors |
Wieland B, Feil C, Gloria-Maercker E, Thumm G, Lechner M, Bravo JM, Poralla K, Gotz F. |
| Title |
Genetic and biochemical analyses of the biosynthesis of the yellow carotenoid 4,4'-diaponeurosporene of Staphylococcus aureus. |
| Journal |
J Bacteriol 176:7719-26 (1994) |
| Reference |
PMID: 10395965 (Streptomyces griseus-Carotenoid pathway) |
| Authors |
Krugel H, Krubasik P, Weber K, Saluz HP, Sandmann G. |
| Title |
Functional analysis of genes from Streptomyces griseus involved in the synthesis of isorenieratene, a carotenoid with aromatic end groups, revealed a novel type of carotenoid desaturase. |
| Journal |
Biochim Biophys Acta 1439:57-64 (1999) |
| Reference |
PMID: 11479383 (Cyanobacteria-Myxol pathway) |
| Authors |
Takaichi S, Maoka T, Masamoto K. |
| Title |
Myxoxanthophyll in Synechocystis sp. PCC 6803 is myxol 2'-dimethyl-fucoside, (3R,2'S)-myxol 2'-(2,4-di-O-methyl-alpha-L-fucoside), not rhamnoside. |
| Journal |
Plant Cell Physiol 42:756-62 (2001) |
| Reference |
PMID: 15695449 (Cyanobacteria-Myxol pathway) |
| Authors |
Takaichi S, Mochimaru M, Maoka T, Katoh H. |
| Title |
Myxol and 4-ketomyxol 2'-fucosides, not rhamnosides, from Anabaena sp. PCC 7120 and Nostoc punctiforme PCC 73102, and proposal for the biosynthetic pathway of carotenoids. |
| Journal |
Plant Cell Physiol 46:497-504 (2005) |
| Reference |
PMID: 9092504 (Cyanobacteria-Carotenoid pathway) |
| Authors |
Fernandez-Gonzalez B, Sandmann G, Vioque A. |
| Title |
A new type of asymmetrically acting beta-carotene ketolase is required for the synthesis of echinenone in the cyanobacterium Synechocystis sp. PCC 6803. |
| Journal |
J Biol Chem 272:9728-33 (1997) |
| Reference |
PMID: 16242129 (Cyanobacteria-Carotenoid pathway) |
| Authors |
Mochimaru M, Masukawa H, Takaichi S. |
| Title |
The cyanobacterium Anabaena sp. PCC 7120 has two distinct beta-carotene ketolases: CrtO for echinenone and CrtW for ketomyxol synthesis. |
| Journal |
FEBS Lett 579:6111-4 (2005) |
| Reference |
PMID: 7919981 (Cyanobacteria-Carotenoid pathway) |
| Authors |
Cunningham FX Jr, Sun Z, Chamovitz D, Hirschberg J, Gantt E. |
| Title |
Molecular structure and enzymatic function of lycopene cyclase from the cyanobacterium Synechococcus sp strain PCC7942. |
| Journal |
Plant Cell 6:1107-21 (1994) |
| Reference |
PMID: 15811329 (Cyanobacteria-Carotenoid pathway) |
| Authors |
Tsuchiya T, Takaichi S, Misawa N, Maoka T, Miyashita H, Mimuro M. |
| Title |
The cyanobacterium Gloeobacter violaceus PCC 7421 uses bacterial-type phytoene desaturase in carotenoid biosynthesis. |
| Journal |
FEBS Lett 579:2125-9 (2005) |
| Reference |
PMID: 15115301 (Green sulfer bacteria-Carotenoid pathway) |
| Authors |
Hirabayashi H, Ishii T, Takaichi S, Inoue K, Uehara K. |
| Title |
The role of carotenoids in the photoadaptation of the brown-colored sulfur bacterium Chlorobium phaeobacteroides. |
| Journal |
Photochem Photobiol 79:280-5 (2004) |
| Reference |
PMID: 16923888 (Green sulfer bacteria-Carotenoid pathway) |
| Authors |
Maresca JA, Bryant DA. |
| Title |
Two genes encoding new carotenoid-modifying enzymes in the green sulfur bacterium Chlorobium tepidum. |
| Journal |
J Bacteriol 188:6217-23 (2006) |
| Reference |
PMID: 15292122 (Green sulfer bacteria-Carotenoid pathway) |
| Authors |
Frigaard NU, Maresca JA, Yunker CE, Jones AD, Bryant DA. |
| Title |
Genetic manipulation of carotenoid biosynthesis in the green sulfur bacterium Chlorobium tepidum. |
| Journal |
J Bacteriol 186:5210-20 (2004) |
| Reference |
PMID: 9297463 (Green sulfer bacteria-Carotenoid pathway) |
| Authors |
Takaichi S, Wang ZY, Umetsu M, Nozawa T, Shimada K, Madigan MT. |
| Title |
New carotenoids from the thermophilic green sulfur bacterium Chlorobium tepidum: 1',2'-dihydro-gamma-carotene, 1',2'-dihydrochlorobactene, and OH-chlorobactene glucoside ester, and the carotenoid composition of different strains. |
| Journal |
Arch Microbiol 168:270-6 (1997) |
| Reference |
PMID: 8661926 (Thermophilic bacteria-Thermocryptoxanthins) |
| Authors |
Yokoyama A, Shizuri Y, Hoshino T, Sandmann G. |
| Title |
Thermocryptoxanthins: novel intermediates in the carotenoid biosynthetic pathway of Thermus thermophilus |
| Journal |
Arch Microbiol 165:342-5 (1996) |
| Reference |
(Sulfolobus solfataricus-Carotenoid pathway) |
| Authors |
Hemmi H, Ikejiri S, Nakayama T, Nishio T. |
| Title |
Fusion-type lycopene ?? cyclase from a thermoacidophilic archaeon Sulfolobus solfataricus. |
| Journal |
Biochemical and Biophysical Research Communications 305(3):586-591 (2003) |
| KO pathway |
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