KEGG   PATHWAY: hpy00020
Entry
hpy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Helicobacter pylori 26695
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
hpy00020  Citrate cycle (TCA cycle)
hpy00020

Module
hpy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:hpy00020]
hpy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:hpy00020]
Other DBs
GO: 0006099
Organism
Helicobacter pylori 26695 [GN:hpy]
Gene
HP_0026  citrate synthase (gltA) [KO:K01647] [EC:2.3.3.1]
HP_0779  aconitase B (acnB) [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HP_0027  isocitrate dehydrogenase (icd) [KO:K00031] [EC:1.1.1.42]
HP_0589  ferredoxin oxidoreductase, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
HP_0590  ferredoxin oxidoreductase, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
HP_0591  ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
HP_0588  ferrodoxin-like protein [KO:K00176] [EC:1.2.7.3]
HP_0192  fumarate reductase, flavoprotein subunit (frdA) [KO:K00233] [EC:1.3.5.1 7.1.1.12]
HP_0191  fumarate reductase, iron-sulfur subunit (frdB) [KO:K25995] [EC:1.3.5.1 7.1.1.12]
HP_0193  fumarate reductase, cytochrome b subunit (frdC) [KO:K25996]
HP_1325  fumarase (fumC) [KO:K01679] [EC:4.2.1.2]
HP_0086  conserved hypothetical protein [KO:K00116] [EC:1.1.5.4]
HP_1110  pyruvate ferredoxin oxidoreductase, alpha subunit [KO:K00169] [EC:1.2.7.1]
HP_1111  pyruvate ferredoxin oxidoreductase, beta subunit [KO:K00170] [EC:1.2.7.1]
HP_1108  pyruvate ferredoxin oxidoreductase, gamma subunit [KO:K00172] [EC:1.2.7.1]
HP_1109  pyruvate ferredoxin oxidoreductase, delta subunit [KO:K00171] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
hpy00010  Glycolysis / Gluconeogenesis
hpy00061  Fatty acid biosynthesis
hpy00071  Fatty acid degradation
hpy00190  Oxidative phosphorylation
hpy00220  Arginine biosynthesis
hpy00250  Alanine, aspartate and glutamate metabolism
hpy00280  Valine, leucine and isoleucine degradation
hpy00470  D-Amino acid metabolism
hpy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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