KEGG   PATHWAY: hse00260
Entry
hse00260                    Pathway                                
Name
Glycine, serine and threonine metabolism - Herbaspirillum seropedicae SmR1
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
hse00260  Glycine, serine and threonine metabolism
hse00260

Module
hse_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:hse00260]
hse_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:hse00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Herbaspirillum seropedicae SmR1 [GN:hse]
Gene
Hsero_2141  lysC; aspartokinase protein [KO:K00928] [EC:2.7.2.4]
Hsero_3296  asd; aspartate-semialdehyde dehydrogenase protein [KO:K00133] [EC:1.2.1.11]
Hsero_2094  thrA; homoserine dehydrogenase protein [KO:K00003] [EC:1.1.1.3]
Hsero_0450  thrB; homoserine kinase protein [KO:K02204] [EC:2.7.1.39]
Hsero_2096  thrC; threonine synthase protein [KO:K01733] [EC:4.2.3.1]
Hsero_1223  glyA; serine hydroxymethyltransferase protein [KO:K00600] [EC:2.1.2.1]
Hsero_2486  serA; D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Hsero_1127  serA; D-3-phosphoglycerate dehydrogenase protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
Hsero_1501  D-isomer specific 2-hydroxyacid dehydrogenase protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Hsero_1631  dehydrogenase oxidoreductase protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
Hsero_2012  glycerate kinase protein [KO:K00865] [EC:2.7.1.165]
Hsero_0163  gpmA; 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase protein [KO:K01834] [EC:5.4.2.11]
Hsero_0410  gpmB; phosphoglycerate mutase 2 protein [KO:K15634] [EC:5.4.2.11]
Hsero_4313  serA; D-3-phosphoglycerate dehydrogenase protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Hsero_4453  serA; D-3-phosphoglycerate dehydrogenase protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
Hsero_3694  serC; phosphoserine aminotransferase protein [KO:K00831] [EC:2.6.1.52]
Hsero_3024  serB; phosphoserine phosphatase protein [KO:K01079] [EC:3.1.3.3]
Hsero_1222  short-chain alcohol dehydrogenase protein [KO:K16066] [EC:1.1.1.381 1.1.1.-]
Hsero_3531  tynA; primary-amine oxidase [KO:K00276] [EC:1.4.3.21]
Hsero_2967  lpdA; 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
Hsero_1455  lpdA; 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
Hsero_1572  gcvH; glycine cleavage system H (lipoate-binding) protein [KO:K02437]
Hsero_1741  pssA; CDP-diacylglycerol--serine O-phosphatidyltransferase protein [KO:K17103] [EC:2.7.8.8]
Hsero_0052  tdcB; threonine dehydratase protein [KO:K01754] [EC:4.3.1.19]
Hsero_3908  ilvA; threonine dehydratase protein [KO:K01754] [EC:4.3.1.19]
Hsero_1809  ilvA; threonine dehydratase protein [KO:K01754] [EC:4.3.1.19]
Hsero_1748  dsd; D-serine deaminase (D-serine dehydratase) protein [KO:K01753] [EC:4.3.1.18]
Hsero_3291  trpA; tryptophan synthase (alpha chain) protein [KO:K01695] [EC:4.2.1.20]
Hsero_3292  trpB; tryptophan synthase (beta chain) protein [KO:K01696] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
hse00010  Glycolysis / Gluconeogenesis
hse00020  Citrate cycle (TCA cycle)
hse00230  Purine metabolism
hse00250  Alanine, aspartate and glutamate metabolism
hse00270  Cysteine and methionine metabolism
hse00290  Valine, leucine and isoleucine biosynthesis
hse00300  Lysine biosynthesis
hse00330  Arginine and proline metabolism
hse00460  Cyanoamino acid metabolism
hse00470  D-Amino acid metabolism
hse00564  Glycerophospholipid metabolism
hse00620  Pyruvate metabolism
hse00630  Glyoxylate and dicarboxylate metabolism
hse00640  Propanoate metabolism
hse00680  Methane metabolism
hse00860  Porphyrin metabolism
hse00920  Sulfur metabolism
KO pathway
ko00260   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (29)   
   KEGG GENES (29)   
All databases (30)   

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