KEGG   PATHWAY: lbc00020
Entry
lbc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Laccaria bicolor
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
lbc00020  Citrate cycle (TCA cycle)
lbc00020

Module
lbc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:lbc00020]
lbc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:lbc00020]
lbc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:lbc00020]
lbc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:lbc00020]
lbc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:lbc00020]
Other DBs
GO: 0006099
Organism
Laccaria bicolor [GN:lbc]
Gene
LACBIDRAFT_188044  hypothetical protein [KO:K01647] [EC:2.3.3.1]
LACBIDRAFT_387122  citrate synthase [KO:K01647] [EC:2.3.3.1]
LACBIDRAFT_297019  peroxysomal citrate synthase [KO:K01647] [EC:2.3.3.1]
LACBIDRAFT_299612  hypothetical protein [KO:K01648] [EC:2.3.3.8]
LACBIDRAFT_189452  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LACBIDRAFT_291064  aconitate hydratase 2 [KO:K01681] [EC:4.2.1.3]
LACBIDRAFT_317084  hypothetical protein [KO:K00031] [EC:1.1.1.42]
LACBIDRAFT_311861  mitochondrial NAD-dependent isocitrate dehydrogenase subunit 1 precursor [KO:K00030] [EC:1.1.1.41]
LACBIDRAFT_311842  mitochondrial NAD-dependent isocitrate dehydrogenase subunit 2 precursor [KO:K00030] [EC:1.1.1.41]
LACBIDRAFT_245492  2-oxoglutarate dehydrogenase complex E1 component, mitochondrial precursor [KO:K00164] [EC:1.2.4.2]
LACBIDRAFT_384857  dihydrolipoyllysine-residue succinyltransferase 1 [KO:K00658] [EC:2.3.1.61]
LACBIDRAFT_182385  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LACBIDRAFT_300566  succinyl-CoA-ligase [KO:K01899] [EC:6.2.1.4 6.2.1.5]
LACBIDRAFT_301769  succinyl-coa synthetase beta chain, SSC-beta [KO:K01900] [EC:6.2.1.4 6.2.1.5]
LACBIDRAFT_188373  hypothetical protein [KO:K00234] [EC:1.3.5.1]
LACBIDRAFT_247971  hypothetical protein [KO:K00234] [EC:1.3.5.1]
LACBIDRAFT_182791  hypothetical protein [KO:K00235] [EC:1.3.5.1]
LACBIDRAFT_189604  hypothetical protein [KO:K00236]
LACBIDRAFT_295137  succinate dehydrogenase cytochrome b560 subunit [KO:K00236]
LACBIDRAFT_249103  hypothetical protein [KO:K00237]
LACBIDRAFT_300776  hypothetical protein [KO:K01679] [EC:4.2.1.2]
LACBIDRAFT_326114  NAD-malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LACBIDRAFT_185536  NAD-malate dehydrogenase [KO:K00026] [EC:1.1.1.37]
LACBIDRAFT_185474  PYC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LACBIDRAFT_234370  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LACBIDRAFT_298422  mitochondrial pyruvate dehydrogenase E1 component beta subunit [KO:K00161] [EC:1.2.4.1]
LACBIDRAFT_188842  mitochondrial pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
LACBIDRAFT_378984  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
lbc00010  Glycolysis / Gluconeogenesis
lbc00053  Ascorbate and aldarate metabolism
lbc00061  Fatty acid biosynthesis
lbc00062  Fatty acid elongation
lbc00071  Fatty acid degradation
lbc00190  Oxidative phosphorylation
lbc00220  Arginine biosynthesis
lbc00250  Alanine, aspartate and glutamate metabolism
lbc00280  Valine, leucine and isoleucine degradation
lbc00350  Tyrosine metabolism
lbc00470  D-Amino acid metabolism
lbc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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