KEGG   PATHWAY: lpj00970
Entry
lpj00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Lactiplantibacillus plantarum JDM1
Class
Genetic Information Processing; Translation
Pathway map
lpj00970  Aminoacyl-tRNA biosynthesis
lpj00970

Organism
Lactiplantibacillus plantarum JDM1 [GN:lpj]
Gene
JDM1_tRNA62  tRNA-Ala [KO:K14218]
JDM1_tRNA08  tRNA-Arg [KO:K14219]
JDM1_tRNA14  tRNA-Arg [KO:K14219]
JDM1_tRNA49  tRNA-Arg [KO:K14219]
JDM1_tRNA34  tRNA-Arg [KO:K14219]
JDM1_tRNA17  tRNA-Arg [KO:K14219]
JDM1_tRNA01  tRNA-Asn [KO:K14220]
JDM1_tRNA09  tRNA-Asn [KO:K14220]
JDM1_tRNA03  tRNA-Asn [KO:K14220]
JDM1_tRNA19  tRNA-Asn [KO:K14220]
JDM1_tRNA33  tRNA-Asp [KO:K14221]
JDM1_tRNA43  tRNA-Asp [KO:K14221]
JDM1_tRNA36  tRNA-Asp [KO:K14221]
JDM1_tRNA28  tRNA-Cys [KO:K14222]
JDM1_tRNA27  tRNA-Gln [KO:K14223]
JDM1_tRNA60  tRNA-Gln [KO:K14223]
JDM1_tRNA06  tRNA-Gln [KO:K14223]
JDM1_tRNA21  tRNA-Glu [KO:K14224]
JDM1_tRNA38  tRNA-Glu [KO:K14224]
JDM1_tRNA59  tRNA-Glu [KO:K14224]
JDM1_tRNA41  tRNA-Gly [KO:K14225]
JDM1_tRNA12  tRNA-Gly [KO:K14225]
JDM1_tRNA51  tRNA-Gly [KO:K14225]
JDM1_tRNA32  tRNA-Gly [KO:K14225]
JDM1_tRNA26  tRNA-His [KO:K14226]
JDM1_tRNA30  tRNA-His [KO:K14226]
JDM1_tRNA40  tRNA-Ile [KO:K14227]
JDM1_tRNA13  tRNA-Leu [KO:K14228]
JDM1_tRNA50  tRNA-Leu [KO:K14228]
JDM1_tRNA29  tRNA-Leu [KO:K14228]
JDM1_tRNA31  tRNA-Leu [KO:K14228]
JDM1_tRNA07  tRNA-Leu [KO:K14228]
JDM1_tRNA10  tRNA-Leu [KO:K14228]
JDM1_tRNA02  tRNA-Lys [KO:K14229]
JDM1_tRNA53  tRNA-Lys [KO:K14229]
JDM1_tRNA56  tRNA-Lys [KO:K14229]
JDM1_tRNA47  tRNA-Met [KO:K14230]
JDM1_tRNA46  tRNA-Met [KO:K14230]
JDM1_tRNA37  tRNA-Met [KO:K14230]
JDM1_tRNA44  tRNA-Met [KO:K14230]
JDM1_tRNA23  tRNA-Phe [KO:K14231]
JDM1_tRNA42  tRNA-Phe [KO:K14231]
JDM1_tRNA15  tRNA-Pro [KO:K14232]
JDM1_tRNA48  tRNA-Pro [KO:K14232]
JDM1_tRNA16  tRNA-Pro [KO:K14232]
JDM1_tRNA45  tRNA-Ser [KO:K14233]
JDM1_tRNA35  tRNA-Ser [KO:K14233]
JDM1_tRNA39  tRNA-Ser [KO:K14233]
JDM1_tRNA20  tRNA-Ser [KO:K14233]
JDM1_tRNA61  tRNA-Thr [KO:K14234]
JDM1_tRNA04  tRNA-Thr [KO:K14234]
JDM1_tRNA52  tRNA-Thr [KO:K14234]
JDM1_tRNA11  tRNA-Thr [KO:K14234]
JDM1_tRNA25  tRNA-Trp [KO:K14235]
JDM1_tRNA18  tRNA-Trp [KO:K14235]
JDM1_tRNA05  tRNA-Tyr [KO:K14236]
JDM1_tRNA24  tRNA-Tyr [KO:K14236]
JDM1_tRNA54  tRNA-Val [KO:K14237]
JDM1_tRNA57  tRNA-Val [KO:K14237]
JDM1_tRNA22  tRNA-Val [KO:K14237]
JDM1_tRNA55  tRNA-Val [KO:K14237]
JDM1_tRNA58  tRNA-Val [KO:K14237]
JDM1_0546  gltX; glutamyl-tRNA synthetase [KO:K09698] [EC:6.1.1.24]
JDM1_0943  gatA; glutamyl-tRNA amidotransferase, subunit A [KO:K02433] [EC:6.3.5.6 6.3.5.7]
JDM1_0944  gatB; aspartyl/glutamyl-tRNA amidotransferase subunit B [KO:K02434] [EC:6.3.5.6 6.3.5.7]
JDM1_0942  gatC; aspartyl/glutamyl-tRNA amidotransferase subunit C [KO:K02435] [EC:6.3.5.6 6.3.5.7]
JDM1_1909  alaS; alanine-tRNA ligase [KO:K01872] [EC:6.1.1.7]
JDM1_1670  aspS; aspartyl-tRNA synthetase [KO:K01876] [EC:6.1.1.12]
JDM1_0793  asnC; asparaginyl-tRNA synthetase [KO:K01893] [EC:6.1.1.22]
JDM1_1462  asnC; asparaginyl-tRNA synthetase [KO:K01893] [EC:6.1.1.22]
JDM1_1656  glyQ; glycyl-tRNA synthetase subunit alpha [KO:K01878] [EC:6.1.1.14]
JDM1_1655  glyS; glycine-tRNA ligase, beta chain [KO:K01879] [EC:6.1.1.14]
JDM1_1268  thrS; threonine-tRNA ligase 1 [KO:K01868] [EC:6.1.1.3]
JDM1_0406  serS1; seryl-tRNA synthetase [KO:K01875] [EC:6.1.1.11]
JDM1_0838  serS2; seryl-tRNA synthetase [KO:K01875] [EC:6.1.1.11]
JDM1_0547  cysS; cysteine-tRNA ligase [KO:K01883] [EC:6.1.1.16]
JDM1_0380  metS; methionine-tRNA ligase [KO:K01874] [EC:6.1.1.10]
JDM1_1356  fmt; methionyl-tRNA formyltransferase [KO:K00604] [EC:2.1.2.9]
JDM1_1942  valS; valyl-tRNA synthetase [KO:K01873] [EC:6.1.1.9]
JDM1_1112  leuS; leucyl-tRNA synthetase [KO:K01869] [EC:6.1.1.4]
JDM1_1830  ileS; isoleucyl-tRNA synthetase [KO:K01870] [EC:6.1.1.5]
JDM1_0448  lysS; lysyl-tRNA synthetase [KO:K04567] [EC:6.1.1.6]
JDM1_1164  argS; arginyl-tRNA synthetase [KO:K01887] [EC:6.1.1.19]
JDM1_1710  proS; prolyl-tRNA synthetase [KO:K01881] [EC:6.1.1.15]
JDM1_1671  hisS; histidyl-tRNA synthetase [KO:K01892] [EC:6.1.1.21]
JDM1_1305  pheS; phenylalanine-tRNA ligase, alpha chain [KO:K01889] [EC:6.1.1.20]
JDM1_1306  pheT; phenylalanyl-tRNA synthetase subunit beta [KO:K01890] [EC:6.1.1.20]
JDM1_2254  tyrS; tyrosine--tRNA ligase [KO:K01866] [EC:6.1.1.1]
JDM1_0364  trpS; tryptophanyl-tRNA synthetase II [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
lpj00250  Alanine, aspartate and glutamate metabolism
lpj00260  Glycine, serine and threonine metabolism
lpj00270  Cysteine and methionine metabolism
lpj00290  Valine, leucine and isoleucine biosynthesis
lpj00300  Lysine biosynthesis
lpj00330  Arginine and proline metabolism
lpj00340  Histidine metabolism
lpj00380  Tryptophan metabolism
lpj00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (89)   
   KEGG GENES (89)   
All databases (90)   

Download RDF
DBGET integrated database retrieval system