| Entry |
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| Name |
Citrate cycle (TCA cycle) - Mahella australiensis
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| Description |
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD: M00009], but contain genes for specific segments [MD: M00010 M00011].
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| Class |
Metabolism; Carbohydrate metabolism
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| Pathway map |
| Citrate cycle (TCA cycle) |

  |
| Module |
| Gluconeogenesis, oxaloacetate => fructose-6P [PATH: mas00020] | | Citrate cycle (TCA cycle, Krebs cycle) [PATH: mas00020] | | Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: mas00020] | | Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: mas00020] | | Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: mas00020] | | 2-oxoglutarate:ferredoxin oxidoreductase [PATH: mas00020] |
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| Other DBs |
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| Organism |
Mahella australiensis [GN: mas]
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| Gene |
| aconitase; K01681 aconitate hydratase 1 / homoaconitase [EC: 4.2.1.3 4.2.1.-] [KO: K01681] [EC:4.2.1.- 4.2.1.3] | | | | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC: 1.2.7.3] [KO: K00174] [EC: 1.2.7.3] | | pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein; K00174 2-oxoglutarate ferredoxin oxidoreductase subunit alpha [EC: 1.2.7.3] [KO: K00174] [EC: 1.2.7.3] | | thiamine pyrophosphate TPP-binding domain-containing protein; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC: 1.2.7.3] [KO: K00175] [EC: 1.2.7.3] | | pyruvate ferredoxin/flavodoxin oxidoreductase subunit beta; K00175 2-oxoglutarate ferredoxin oxidoreductase subunit beta [EC: 1.2.7.3] [KO: K00175] [EC: 1.2.7.3] | | Pyruvate/ketoisovalerate oxidoreductase; K00177 2-oxoglutarate ferredoxin oxidoreductase subunit gamma [EC: 1.2.7.3] [KO: K00177] [EC: 1.2.7.3] | | 2-oxoglutarate ferredoxin oxidoreductase subunit delta; K00176 2-oxoglutarate ferredoxin oxidoreductase subunit delta [EC: 1.2.7.3] [KO: K00176] [EC: 1.2.7.3] | | fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; K00239 succinate dehydrogenase flavoprotein subunit [EC: 1.3.99.1] [KO: K00239] [EC: 1.3.99.1] | | fumarase subunit alpha; K01677 fumarate hydratase subunit alpha [EC: 4.2.1.2] [KO: K01677] [EC: 4.2.1.2] | | | | phosphoenolpyruvate carboxykinase; K01596 phosphoenolpyruvate carboxykinase (GTP) [EC: 4.1.1.32] [KO: K01596] [EC: 4.1.1.32] | | pyruvate ferredoxin oxidoreductase subunit alpha; K00169 pyruvate ferredoxin oxidoreductase, alpha subunit [EC: 1.2.7.1] [KO: K00169] [EC: 1.2.7.1] | | thiamine pyrophosphate TPP-binding domain-containing protein; K00170 pyruvate ferredoxin oxidoreductase, beta subunit [EC: 1.2.7.1] [KO: K00170] [EC: 1.2.7.1] | | pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta; K00171 pyruvate ferredoxin oxidoreductase, delta subunit [EC: 1.2.7.1] [KO: K00171] [EC: 1.2.7.1] | | pyruvate ferredoxin oxidoreductase subunit gamma; K00172 pyruvate ferredoxin oxidoreductase, gamma subunit [EC: 1.2.7.1] [KO: K00172] [EC: 1.2.7.1] |
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| Compound |
| Pyruvate | | Acetyl-CoA | | 2-Oxoglutarate | | Oxaloacetate | | Succinate | | Thiamin diphosphate | | Phosphoenolpyruvate | | Succinyl-CoA | | Fumarate | | (S)-Malate | | Citrate | | Isocitrate | | cis-Aconitate | | 2-(alpha-Hydroxyethyl)thiamine diphosphate | | Oxalosuccinate | | 3-Carboxy-1-hydroxypropyl-ThPP | | Enzyme N6-(lipoyl)lysine | | Enzyme N6-(dihydrolipoyl)lysine | | [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine | | [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine |
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| Reference |
(map 2) |
| Authors |
Nishizuka Y (ed). |
| Title |
[Metabolic Maps] (In Japanese) |
| Journal |
Tokyo Kagaku Dojin (1980) |
| Reference |
(map 3) |
| Authors |
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds). |
| Title |
[Cellular Functions and Metabolic Maps] (In Japanese) |
| Journal |
Tokyo Kagaku Dojin (1997) |
| Reference |
|
| Authors |
Michal G. |
| Title |
Biochemical Pathways |
| Journal |
Wiley (1999) |
| KO pathway |
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