KEGG   PATHWAY: mea03018
Entry
mea03018                    Pathway                                
Name
RNA degradation - Methylorubrum extorquens AM1
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
mea03018  RNA degradation
mea03018

Other DBs
GO: 0006401
Organism
Methylorubrum extorquens AM1 [GN:mea]
Gene
Mex_1p2285  (di)nucleoside polyphosphate hydrolase (Nudix family) [KO:K08311] [EC:3.6.1.-]
Mex_1p3916  putative ribonuclease E or G [KO:K08300] [EC:3.1.26.12]
Mex_1p2984  eno; enolase [KO:K01689] [EC:4.2.1.11]
Mex_1p4416  pnp; polynucleotide phosphorylase/polyadenylase [KO:K00962] [EC:2.7.7.8]
Mex_1p2540  rhlE; RNA helicase [KO:K11927] [EC:3.6.4.13]
Mex_2p0952  Hypothetical protein [KO:K12573] [EC:3.1.13.1]
Mex_1p2382  rnr; ribonuclease R [KO:K12573] [EC:3.1.13.1]
Mex_1p4894  putative ATP-independent RNA helicase, DEAD/DEAH-box family protein [KO:K05592] [EC:3.6.4.13]
Mex_1p0005  recQ; ATP-dependent DNA helicase [KO:K03654] [EC:5.6.2.4]
Mex_2p0238  ATP-dependent DNA helicase (fragment) [KO:K03654] [EC:5.6.2.4]
Mex_2p0075  ATP-dependent DNA helicase (fragment) [KO:K03654] [EC:5.6.2.4]
Mex_1p1454  rho; transcription termination factor Rho; polarity suppressor [KO:K03628]
Mex_1p0840  putative hydrolase, metallo-beta-lactamase superfamily [KO:K12574] [EC:3.1.-.-]
Mex_2p0052  Beta-lactamase family protein [KO:K12574] [EC:3.1.-.-]
Mex_1p3164  dnaK; Chaperone protein DnaK [KO:K04043]
Mex_2p0894  dnaK; chaperone Hsp70 in DNA biosynthesis/cell division [KO:K04043]
Mex_1p5239  groL; 60 kDa chaperonin (protein Cpn60, groEL protein) [KO:K04077] [EC:5.6.1.7]
Mex_1p3552  groL; 60 kDa chaperonin (protein Cpn60, groEL protein) [KO:K04077] [EC:5.6.1.7]
Mex_1p3025  hfq; Protein hfq, RNA-binding host factor [KO:K03666]
Mex_1p2049  ppk; polyphosphate kinase, component of RNA degradosome [KO:K00937] [EC:2.7.4.1]
Mex_1p0907  conserved hypothetical protein [KO:K22468] [EC:2.7.4.34]
Mex_1p1356  putative nucleotidyl transferase/polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   

DBGET integrated database retrieval system