KEGG   PATHWAY: mmq03030
Entry
mmq03030                    Pathway                                
Name
DNA replication - Methanococcus maripaludis C5
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
mmq03030  DNA replication
mmq03030

Organism
Methanococcus maripaludis C5 [GN:mmq]
Gene
MmarC5_0699  Exonuclease, RNase T and DNA polymerase III [KO:K02342] [EC:2.7.7.7]
MmarC5_1161  Exonuclease, RNase T and DNA polymerase III [KO:K02342] [EC:2.7.7.7]
MmarC5_0307  TOPRIM domain protein [KO:K02316] [EC:2.7.7.101]
MmarC5_0204  RNase HII [KO:K03470] [EC:3.1.26.4]
MmarC5_1258  replicative DNA polymerase I [KO:K02319] [EC:2.7.7.7]
MmarC5_1676  DNA polymerase II small subunit [KO:K02323] [EC:2.7.7.7]
MmarC5_1656  DNA polymerase II large subunit [KO:K02322] [EC:2.7.7.7]
MmarC5_0570  replicative DNA helicase Mcm [KO:K10726] [EC:5.6.2.3]
MmarC5_0643  MCM family protein [KO:K10726] [EC:5.6.2.3]
MmarC5_1119  replicative DNA helicase Mcm [KO:K10726] [EC:5.6.2.3]
MmarC5_1650  replicative DNA helicase Mcm [KO:K10726] [EC:5.6.2.3]
MmarC5_1606  DNA primase small subunit [KO:K02683] [EC:2.7.7.102]
MmarC5_1675  DNA primase large subunit [KO:K18882]
MmarC5_0561  nucleic acid binding, OB-fold, tRNA/helicase-type [KO:K07466]
MmarC5_1695  monomeric archaeal DNA polymerase sliding clamp [KO:K04802]
MmarC5_1210  replication factor C small subunit [KO:K04801]
MmarC5_1352  replication factor C large subunit [KO:K04800]
MmarC5_0280  flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
MmarC5_0793  DNA ligase I, ATP-dependent Dnl1 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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