KEGG   PATHWAY: mtk00020
Entry
mtk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Mycobacterium tuberculosis KZN 4207
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
mtk00020  Citrate cycle (TCA cycle)
mtk00020

Module
mtk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:mtk00020]
mtk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:mtk00020]
mtk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:mtk00020]
mtk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:mtk00020]
mtk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:mtk00020]
Other DBs
GO: 0006099
Organism
Mycobacterium tuberculosis KZN 4207 [GN:mtk]
Gene
TBSG_02867  citrate synthase I gltA1 [KO:K01647] [EC:2.3.3.1]
TBSG_03112  citrate synthase I gltA2 [KO:K01647] [EC:2.3.3.1]
TBSG_03119  citrate synthase II citA [KO:K01647] [EC:2.3.3.1]
TBSG_02517  iron-regulated aconitate hydratase acn [KO:K01681] [EC:4.2.1.3]
TBSG_00066  isocitrate dehydrogenase [NADP] icd2 [KO:K00031] [EC:1.1.1.42]
TBSG_03411  isocitrate dehydrogenase [NADP] icd1 [KO:K00031] [EC:1.1.1.42]
TBSG_02747  2-oxoglutarate dehydrogenase sucA [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
TBSG_00469  dihydrolipoamide dehydrogenase lpd [KO:K00382] [EC:1.8.1.4]
TBSG_01528  oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
TBSG_01529  oxidoreductase beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
TBSG_03057  succinyl-CoA synthetase subunit alpha sucD [KO:K01902] [EC:6.2.1.5]
TBSG_03058  succinyl-CoA synthetase subunit beta sucC [KO:K01903] [EC:6.2.1.5]
TBSG_00253  succinate dehydrogenase iron-sulfur subunit [KO:K00239] [EC:1.3.5.1]
TBSG_03390  succinate dehydrogenase flavoprotein subunit sdhA [KO:K00239] [EC:1.3.5.1]
TBSG_00252  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
TBSG_03391  succinate dehydrogenase iron-sulfur protein subunit sdhB [KO:K00240] [EC:1.3.5.1]
TBSG_03388  succinate dehydrogenase cytochrome B-556 subunit sdhC [KO:K00241]
TBSG_03389  succinate dehydrogenase hydrophobic membrane anchor subunit sdhD [KO:K00242]
TBSG_02438  fumarate reductase flavoprotein subunit frdA [KO:K00244] [EC:1.3.5.1]
TBSG_02437  fumarate reductase iron-sulfur subunit frdB [KO:K00245] [EC:1.3.5.1]
TBSG_02436  fumarate reductase membrane anchor subunit frdC [KO:K00246]
TBSG_02435  fumarate reductase membrane anchor subunit frdD [KO:K00247]
TBSG_02902  fumarase fum [KO:K01679] [EC:4.2.1.2]
TBSG_02755  malate dehydrogenase mdh [KO:K00024] [EC:1.1.1.37]
TBSG_01129  malate:quinone oxidoreductase mqo [KO:K00116] [EC:1.1.5.4]
TBSG_01010  pyruvate carboxylase pca [KO:K01958] [EC:6.4.1.1]
TBSG_00214  iron-regulated phosphoenolpyruvate carboxykinase pckA [KO:K01596] [EC:4.1.1.32]
TBSG_01749  pyruvate dehydrogenase E1 component aceE [KO:K00163] [EC:1.2.4.1]
TBSG_01777  pyruvate dehydrogenase E2 component sucB [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
mtk00010  Glycolysis / Gluconeogenesis
mtk00053  Ascorbate and aldarate metabolism
mtk00061  Fatty acid biosynthesis
mtk00071  Fatty acid degradation
mtk00190  Oxidative phosphorylation
mtk00220  Arginine biosynthesis
mtk00250  Alanine, aspartate and glutamate metabolism
mtk00280  Valine, leucine and isoleucine degradation
mtk00350  Tyrosine metabolism
mtk00470  D-Amino acid metabolism
mtk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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