KEGG PATHWAY: nat00630

KEGG

PATHWAY: nat00630

Entry

nat00630                    Pathway

Name

Glyoxylate and dicarboxylate metabolism - Natrinema sp. J7-2

Class

Metabolism; Carbohydrate metabolism

Pathway map

Glyoxylate and dicarboxylate metabolism

Module

Glycine cleavage system [PATH:nat00630]

Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:nat00630]

Pentose bisphosphate pathway (nucleoside degradation), archaea, nucleoside/NMP => 3-PGA/glycerone phosphate [PATH:nat00630]

Other DBs

GO:	0046487 0043648

Organism

Natrinema sp. J7-2 [GN:nat]

Gene

AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]

AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]

AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]

AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]

AMP-dependent synthetase and ligase [KO:K01895] [EC:6.2.1.1]

acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]

acetate/CoA ligase [KO:K01895] [EC:6.2.1.1]

lactate/malate dehydrogenase [KO:K00024] [EC:1.1.1.37]

citrate synthase [KO:K01647] [EC:2.3.3.1]

citrate synthase [KO:K01647] [EC:2.3.3.1]

2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]

aconitate hydratase [KO:K01681] [EC:4.2.1.3]

propanoyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]

Propanoyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]

Propanoyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]

Propanoyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]

Propanoyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]

MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]

MaoC domain protein dehydratase [KO:K17865] [EC:4.2.1.55]

methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]

MaoC domain protein dehydratase [KO:K14449] [EC:4.2.1.148]

Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]

Carbamoyl-phosphate synthase L chain ATP-binding protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]

carboxyl transferase [KO:K19312] [EC:6.4.1.2 6.4.1.3 2.1.3.15]

hypothetical protein [KO:K22568] [EC:6.4.1.2 6.4.1.3]

cobalamin B12-binding domain protein [KO:K01849] [EC:5.4.99.2]

methylmalonyl-CoA mutase large subunit [KO:K01848] [EC:5.4.99.2]

methylmalonyl-CoA mutase, large subunit [KO:K01848] [EC:5.4.99.2]

methylaspartate mutase, E subunit [KO:K19268] [EC:5.4.99.1]

methylaspartate mutase, S subunit [KO:K01846] [EC:5.4.99.1]

methylaspartate mutase, S subunit [KO:K01846] [EC:5.4.99.1]

methylaspartate ammonia-lyase [KO:K04835] [EC:4.3.1.2]

L-carnitine dehydratase/bile acid-inducible protein F [KO:K19280] [EC:2.8.3.26]

HpcH/HpaI aldolase [KO:K19281] [EC:4.1.3.24]

haloacid dehalogenase [KO:K01091] [EC:3.1.3.18]

HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]

HAD-superfamily hydrolase, subfamily IA, variant 1 [KO:K01091] [EC:3.1.3.18]

SPP-like hydrolase [KO:K22223] [EC:3.1.3.18]

ribulose bisphosphate carboxylase, type III [KO:K01601] [EC:4.1.1.39]

Serine--pyruvate transaminase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]

glutamate synthase [KO:K00284] [EC:1.4.7.1]

glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]

glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]

Glycine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]

Glycine dehydrogenase [KO:K00282] [EC:1.4.4.2]

aminotransferase class V [KO:K00283] [EC:1.4.4.2]

glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]

folate-binding protein YgfZ [KO:K00605] [EC:2.1.2.10]

dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]

glycine cleavage system H protein [KO:K02437]

Hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]

2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]

formyl transferase [KO:K01433] [EC:3.5.1.10]

Compound

Oxygen

CO2

Ammonia

Pyruvate

Acetyl-CoA

L-Glutamate

2-Oxoglutarate

Hydrogen peroxide

Acetate

Oxaloacetate

Glycine

Succinate

Glyoxylate

Formate

L-Glutamine

L-Serine

Succinyl-CoA

Propanoyl-CoA

Glycerone phosphate

Butanoyl-CoA

(S)-Malate

Citrate

Glycolate

Hydroxypyruvate

3-Phospho-D-glycerate

Oxalate

D-Glycerate

Glycolaldehyde

Isocitrate

Oxalyl-CoA

Acetoacetyl-CoA

cis-Aconitate

meso-Tartaric acid

2-Phospho-D-glycerate

(S)-Methylmalonyl-CoA

Formyl-CoA

Crotonoyl-CoA

Pentanoyl-CoA

(R,R)-Tartaric acid

Dihydroxyfumarate

2-Phosphoglycolate

4-Hydroxy-2-oxoglutarate

2-Hydroxy-3-oxopropanoate

D-Ribulose 1,5-bisphosphate

(R)-Methylmalonyl-CoA

Ethylene glycol

Mesaconate

3-Ethylmalate

3-Oxalomalate

3-Propylmalate

Formyl phosphate

2-Hydroxy-3-oxoadipate

2-Hydroxy-3-oxosuccinate

trans-2,3-Epoxysuccinate

(R)-3-Hydroxybutanoyl-CoA

L-threo-3-Methylaspartate

L-Malyl-CoA

L-erythro-3-Methylmalyl-CoA

2-Methylfumaryl-CoA

N-Formylderivatives

(2S)-Ethylmalonyl-CoA

(2S)-Methylsuccinyl-CoA

(2R)-Ethylmalonyl-CoA

D-Ribulose 1-phosphate

Reference

Authors

Njau RK, Herndon CA, Hawes JW.

Title

Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.

Journal

J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200

Reference

Authors

Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G

Title

Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.

Journal

J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07

Reference

Authors

Erb TJ, Retey J, Fuchs G, Alber BE

Title

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Journal

J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200

Reference

Authors

Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM

Title

Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.

Journal

Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741

Reference

Authors

Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A

Title

Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.

Journal

Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910

Reference

Authors

Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA

Title

A methylaspartate cycle in haloarchaea.

Journal

Science 331:334-7 (2011)
DOI:10.1126/science.1196544

Reference

Authors

Serrano JA, Bonete MJ

Title

Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.

Journal

Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9

Related
pathway

Glycolysis / Gluconeogenesis

Citrate cycle (TCA cycle)

Pentose phosphate pathway

Ascorbate and aldarate metabolism

Fatty acid degradation

Purine metabolism

Alanine, aspartate and glutamate metabolism

Glycine, serine and threonine metabolism

Pyruvate metabolism

Vitamin B6 metabolism

Nitrogen metabolism

KO pathway

All links

Genome (1)   
   KEGG GENOME (1)   
Gene (53)   
   KEGG GENES (53)   
All databases (54)   

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