KEGG   PATHWAY: pcs04144
Entry
pcs04144                    Pathway                                
Name
Endocytosis - Penicillium rubens
Description
Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.
Class
Cellular Processes; Transport and catabolism
Pathway map
pcs04144  Endocytosis
pcs04144

Other DBs
GO: 0006897
Organism
Penicillium rubens [GN:pcs]
Gene
N7525_000941  uncharacterized protein [KO:K07941]
N7525_009217  uncharacterized protein [KO:K00889] [EC:2.7.1.68]
N7525_006658  uncharacterized protein [KO:K01115] [EC:3.1.4.4]
N7525_009258  uncharacterized protein [KO:K01115] [EC:3.1.4.4]
N7525_008623  uncharacterized protein [KO:K01115] [EC:3.1.4.4]
N7525_003447  uncharacterized protein [KO:K04646]
N7525_003505  uncharacterized protein [KO:K11824]
N7525_004309  uncharacterized protein [KO:K11825]
N7525_004810  uncharacterized protein [KO:K11826]
N7525_002472  uncharacterized protein [KO:K12562]
N7525_000485  uncharacterized protein [KO:K12471]
N7525_005777  uncharacterized protein [KO:K12471]
N7525_004210  uncharacterized protein [KO:K12472]
N7525_010378  uncharacterized protein [KO:K19366]
N7525_011407  uncharacterized protein [KO:K10591] [EC:2.3.2.26]
N7525_004001  uncharacterized protein [KO:K23612]
N7525_002974  uncharacterized protein [KO:K17260]
N7525_007115  uncharacterized protein [KO:K18584]
N7525_000133  uncharacterized protein [KO:K05757]
N7525_010020  Arp2/3 complex 34kDa subunit p34-Arc [KO:K05758]
N7525_007988  uncharacterized protein [KO:K05756]
N7525_004031  ARP2/3 complex 20 kDa subunit (P20-ARC) [KO:K05755]
N7525_000911  uncharacterized protein [KO:K05754]
N7525_005241  uncharacterized protein [KO:K03283]
N7525_005202  uncharacterized protein [KO:K03283]
N7525_009911  uncharacterized protein [KO:K10364]
N7525_003870  uncharacterized protein [KO:K10365]
N7525_011405  Phosphodiesterase [KO:K18467]
N7525_005702  uncharacterized protein [KO:K18466]
N7525_003170  uncharacterized protein [KO:K18468]
N7525_008730  uncharacterized protein [KO:K17918]
N7525_001493  uncharacterized protein [KO:K11839] [EC:3.4.19.12]
N7525_008812  uncharacterized protein [KO:K11866] [EC:3.4.19.12]
N7525_007196  uncharacterized protein [KO:K07897]
N7525_001492  uncharacterized protein [KO:K12182]
N7525_001499  uncharacterized protein [KO:K04705]
N7525_002470  uncharacterized protein [KO:K12183]
N7525_006255  uncharacterized protein [KO:K12184]
N7525_003573  uncharacterized protein [KO:K12188]
N7525_003540  uncharacterized protein [KO:K12190]
N7525_005678  uncharacterized protein [KO:K12189]
N7525_011448  uncharacterized protein [KO:K12195]
N7525_000256  uncharacterized protein [KO:K12194]
N7525_006826  uncharacterized protein [KO:K12193]
N7525_006853  uncharacterized protein [KO:K12191]
N7525_006638  uncharacterized protein [KO:K15053]
N7525_001009  uncharacterized protein [KO:K12196]
N7525_003814  uncharacterized protein [KO:K12199]
N7525_000060  uncharacterized protein [KO:K12197]
N7525_005556  Snf7 [KO:K12198]
N7525_004680  uncharacterized protein [KO:K12200]
N7525_005926  uncharacterized protein [KO:K17917]
N7525_000191  uncharacterized protein [KO:K04513]
N7525_000907  uncharacterized protein [KO:K07889]
N7525_002516  uncharacterized protein [KO:K12481]
N7525_002092  uncharacterized protein [KO:K12479]
N7525_005914  uncharacterized protein [KO:K17919]
N7525_003601  Rab GTPase SrgA [KO:K07901]
N7525_004174  uncharacterized protein [KO:K07904]
N7525_006142  uncharacterized protein [KO:K10396]
N7525_005347  Small GTPase superfamily Ras type [KO:K04393]
N7525_001612  uncharacterized protein [KO:K12486]
N7525_009312  uncharacterized protein [KO:K12488]
N7525_008345  uncharacterized protein [KO:K12492]
N7525_004397  uncharacterized protein [KO:K12493]
N7525_008619  uncharacterized protein [KO:K18442]
N7525_007172  uncharacterized protein [KO:K18443]
N7525_003090  uncharacterized protein [KO:K07937]
Compound
C00035  GDP
C00044  GTP
C04549  1-Phosphatidyl-1D-myo-inositol 3-phosphate
C04637  1-Phosphatidyl-D-myo-inositol 4,5-bisphosphate
C05981  Phosphatidylinositol-3,4,5-trisphosphate
C11556  1-Phosphatidyl-1D-myo-inositol 3,5-bisphosphate
Reference
  Authors
Acconcia F, Sigismund S, Polo S
  Title
Ubiquitin in trafficking: the network at work.
  Journal
Exp Cell Res 315:1610-8 (2009)
DOI:10.1016/j.yexcr.2008.10.014
Reference
  Authors
Donaldson JG, Porat-Shliom N, Cohen LA
  Title
Clathrin-independent endocytosis: a unique platform for cell signaling and PM remodeling.
  Journal
Cell Signal 21:1-6 (2009)
DOI:10.1016/j.cellsig.2008.06.020
Reference
  Authors
Sorkin A
  Title
Cargo recognition during clathrin-mediated endocytosis: a team effort.
  Journal
Curr Opin Cell Biol 16:392-9 (2004)
DOI:10.1016/j.ceb.2004.06.001
Reference
  Authors
Raiborg C, Stenmark H
  Title
The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins.
  Journal
Nature 458:445-52 (2009)
DOI:10.1038/nature07961
Reference
  Authors
Scita G, Di Fiore PP
  Title
The endocytic matrix.
  Journal
Nature 463:464-73 (2010)
DOI:10.1038/nature08910
Reference
  Authors
Le Roy C, Wrana JL
  Title
Clathrin- and non-clathrin-mediated endocytic regulation of cell signalling.
  Journal
Nat Rev Mol Cell Biol 6:112-26 (2005)
DOI:10.1038/nrm1571
Reference
  Authors
Jovic M, Sharma M, Rahajeng J, Caplan S
  Title
The early endosome: a busy sorting station for proteins at the crossroads.
  Journal
Histol Histopathol 25:99-112 (2010)
DOI:10.14670/HH-25.99
Reference
  Authors
Pietiainen VM, Marjomaki V, Heino J, Hyypia T
  Title
Viral entry, lipid rafts and caveosomes.
  Journal
Ann Med 37:394-403 (2005)
DOI:10.1080/07853890510011976
Reference
  Authors
Grant BD, Donaldson JG
  Title
Pathways and mechanisms of endocytic recycling.
  Journal
Nat Rev Mol Cell Biol 10:597-608 (2009)
DOI:10.1038/nrm2755
Reference
  Authors
Cullen PJ, Korswagen HC
  Title
Sorting nexins provide diversity for retromer-dependent trafficking events.
  Journal
Nat Cell Biol 14:29-37 (2012)
DOI:10.1038/ncb2374
Related
pathway
pcs04070  Phosphatidylinositol signaling system
pcs04130  SNARE interactions in vesicular transport
KO pathway
ko04144   

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