KEGG   PATHWAY: pdk00020
Entry
pdk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Pseudomonas aeruginosa DK2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pdk00020  Citrate cycle (TCA cycle)
pdk00020

Module
pdk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pdk00020]
pdk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pdk00020]
pdk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pdk00020]
pdk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pdk00020]
Other DBs
GO: 0006099
Organism
Pseudomonas aeruginosa DK2 [GN:pdk]
Gene
PADK2_17805  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
PADK2_17905  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
PADK2_16745  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
PADK2_11540  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
PADK2_11545  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
PADK2_17780  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
PADK2_17775  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
PADK2_14025  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PADK2_25630  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PADK2_17770  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
PADK2_17760  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
PADK2_17765  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
PADK2_28970  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
PADK2_17790  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
PADK2_17785  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
PADK2_17800  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
PADK2_17795  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
PADK2_22580  putative fumarase [KO:K01676] [EC:4.2.1.2]
PADK2_23280  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PADK2_21435  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
PADK2_07000  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PADK2_24655  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
PADK2_28915  pyruvate carboxylase subunit A [KO:K01959] [EC:6.4.1.1]
PADK2_28910  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
PADK2_26570  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
PADK2_26575  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pdk00010  Glycolysis / Gluconeogenesis
pdk00053  Ascorbate and aldarate metabolism
pdk00061  Fatty acid biosynthesis
pdk00071  Fatty acid degradation
pdk00190  Oxidative phosphorylation
pdk00220  Arginine biosynthesis
pdk00250  Alanine, aspartate and glutamate metabolism
pdk00280  Valine, leucine and isoleucine degradation
pdk00350  Tyrosine metabolism
pdk00470  D-Amino acid metabolism
pdk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

DBGET integrated database retrieval system