KEGG   PATHWAY: pgl00630Help
Entry
pgl00630                    Pathway                                

Name
Glyoxylate and dicarboxylate metabolism - Phaeobacter inhibens 2.10
Class
Metabolism; Carbohydrate metabolism
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Pathway map
Glyoxylate and dicarboxylate metabolism
pgl00630

All organismsOrtholog table
Module
Ethylmalonyl pathway [PATH:pgl00630]
Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:pgl00630]
Organism
Phaeobacter inhibens 2.10 [GN:pgl]
Gene
glcB; malate synthase GlcB [KO:K01638] [EC:2.3.3.9]
mdh; malate dehydrogenase Mdh [KO:K00024] [EC:1.1.1.37]
gltA1; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
gltA2; citrate synthase GltA [KO:K01647] [EC:2.3.3.1]
acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
fadA2; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
fadA1; 3-ketoacyl-CoA thiolase FadA [KO:K00626] [EC:2.3.1.9]
phaA; acetyl-CoA acetyltransferase PhaA [KO:K00626] [EC:2.3.1.9]
acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
phbA; acetyl-CoA acetyltransferase PhbA [KO:K00626] [EC:2.3.1.9]
phaB; acetoacetyl-CoA reductase PhaB [KO:K00023] [EC:1.1.1.36]
maoC like -like protein [KO:K17865] [EC:4.2.1.55]
crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
mutB; methylmalonyl-CoA mutase large subunit [KO:K14447] [EC:5.4.99.63]
acyl-CoA dehydrogenase [KO:K14448] [EC:1.3.8.12]
hypothetical protein [KO:K14449] [EC:4.2.1.148]
putative citrate lyase subunit beta [KO:K08691] [EC:4.1.3.25 4.1.3.24]
putative citrate lyase subunit beta [KO:K14451] [EC:3.1.2.30]
pccA; propionyl-CoA carboxylase alpha chain [KO:K01965] [EC:6.4.1.3]
pccB; propionyl-CoA carboxylase beta chain [KO:K01966] [EC:6.4.1.3]
bhbA; methylmalonyl-CoA mutase BhbA [KO:K01847] [EC:5.4.99.2]
glcD; glycolate oxidase subunit GlcD [KO:K00104] [EC:1.1.3.15]
glcE; glycolate oxidase subunit GlcE [KO:K11472]
glcF; glycolate oxidase iron-sulfur subunit [KO:K11473]
hypothetical protein [KO:K03781] [EC:1.11.1.6]
putative catalase [KO:K03781] [EC:1.11.1.6]
hydrolase, HAD-superfamily [KO:K01091] [EC:3.1.3.18]
phosphoglycolate phosphatase-like protein [KO:K01091] [EC:3.1.3.18]
putative hydrolase [KO:K01091] [EC:3.1.3.18]
putative serine-glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.51 2.6.1.45 2.6.1.44]
putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
glnA; glutamine synthetase GlnA [KO:K01915] [EC:6.3.1.2]
puuA1; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
puuA2; gamma-glutamylputrescine synthetase PuuA [KO:K01915] [EC:6.3.1.2]
putative glutamine synthetase [KO:K01915] [EC:6.3.1.2]
glutamine synthase-like protein [KO:K01915] [EC:6.3.1.2]
hypothetical protein [KO:K01915] [EC:6.3.1.2]
glyA; serine hydroxymethyltransferase GlyA [KO:K00600] [EC:2.1.2.1]
putative serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
gcvP; glycine dehydrogenase GcvP [KO:K00281] [EC:1.4.4.2]
gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
gcvT; aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
lpdA1; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
lpdA; dihydrolipoyl dehydrogenase LpdA [KO:K00382] [EC:1.8.1.4]
lpd; dihydrolipoyl dehydrogenase 2 [KO:K00382] [EC:1.8.1.4]
gcvH; glycine cleavage system protein GcvH [KO:K02437]
gcvH; glycine cleavage system protein GcvH [KO:K02437]
ygbM; protein YgbM [KO:K01816] [EC:5.3.1.22]
putative hydroxypyruvate reductase [KO:K11529] [EC:2.7.1.165]
putative glyoxylate/hydroxypyruvate reductase A [KO:K12972] [EC:1.1.1.81 1.1.1.79]
dmlA; D-malate dehydrogenase (decarboxylating) [KO:K07246] [EC:1.1.1.83 4.1.1.73 1.1.1.93]
eda; KHG/KDPG aldolase Eda [KO:K01625] [EC:4.1.3.42 4.1.2.14]
nuoEF; NADH-quinone oxidoreductase subunits E/F [KO:K00122] [EC:1.2.1.2]
putative formate dehydrogenase H [KO:K00123] [EC:1.2.1.2]
fdhF; formate dehydrogenase H [KO:K00123] [EC:1.2.1.2]
fdhB; formate dehydrogenase iron-sulfur subunit [KO:K00124]
putative formate dehydrogenase gamma subunit [KO:K00127]
Compound
C00007  
Oxygen
C00011  
CO2
C00014  
Ammonia
C00022  
Pyruvate
C00024  
Acetyl-CoA
C00025  
L-Glutamate
C00026  
2-Oxoglutarate
C00027  
Hydrogen peroxide
C00036  
Oxaloacetate
C00037  
Glycine
C00042  
Succinate
C00048  
Glyoxylate
C00058  
Formate
C00064  
L-Glutamine
C00065  
L-Serine
C00091  
Succinyl-CoA
C00100  
Propanoyl-CoA
C00136  
Butanoyl-CoA
C00149  
(S)-Malate
C00158  
Citrate
C00160  
Glycolate
C00168  
Hydroxypyruvate
C00197  
3-Phospho-D-glycerate
C00209  
Oxalate
C00258  
D-Glycerate
C00266  
Glycolaldehyde
C00311  
Isocitrate
C00313  
Oxalyl-CoA
C00332  
Acetoacetyl-CoA
C00417  
cis-Aconitate
C00552  
meso-Tartaric acid
C00631  
2-Phospho-D-glycerate
C00683  
(S)-Methylmalonyl-CoA
C00798  
Formyl-CoA
C00877  
Crotonoyl-CoA
C00888  
Pentanoyl-CoA
C00898  
(R,R)-Tartaric acid
C00975  
Dihydroxyfumarate
C00988  
2-Phosphoglycolate
C01127  
4-Hydroxy-2-oxoglutarate
C01146  
2-Hydroxy-3-oxopropanoate
C01182  
D-Ribulose 1,5-bisphosphate
C01213  
(R)-Methylmalonyl-CoA
C01380  
Ethylene glycol
C01732  
Mesaconate
C01989  
3-Ethylmalate
C01990  
3-Oxalomalate
C02123  
3-Propylmalate
C02405  
Formyl phosphate
C03217  
2-Hydroxy-3-oxoadipate
C03459  
2-Hydroxy-3-oxosuccinate
C03548  
trans-2,3-Epoxysuccinate
C03561  
(R)-3-Hydroxybutanoyl-CoA
C03618  
L-threo-3-Methylaspartate
C04348  
L-Malyl-CoA
C06027  
L-erythro-3-Methylmalyl-CoA
C06028  
2-Methylfumaryl-CoA
C06049  
N-Formylderivatives
C18026  
(2S)-Ethylmalonyl-CoA
C18324  
(2S)-Methylsuccinyl-CoA
C20238  
(2R)-Ethylmalonyl-CoA
Reference
PMID:10978349 (EC5.3.1.22)
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
Reference
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
Reference
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
Reference
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play  distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
Reference
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
Reference
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
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