KEGG   PATHWAY: pme03018
Entry
pme03018                    Pathway                                
Name
RNA degradation - Prochlorococcus marinus NATL1A
Description
The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.
Class
Genetic Information Processing; Folding, sorting and degradation
Pathway map
pme03018  RNA degradation
pme03018

Other DBs
GO: 0006401
Organism
Prochlorococcus marinus NATL1A [GN:pme]
Gene
NATL1_19421  rne; S1 RNA binding domain:Ribonuclease E and G [KO:K08300] [EC:3.1.26.12]
NATL1_02841  eno; Enolase [KO:K01689] [EC:4.2.1.11]
NATL1_16651  polyribonucleotide nucleotidyltransferase [KO:K00962] [EC:2.7.7.8]
NATL1_10421  vacB; putative acetazolamide conferring resistance protein Zam [KO:K12573] [EC:3.1.13.1]
NATL1_14791  srmB; putative ATP-dependent RNA helicase [KO:K05592] [EC:5.6.2.7]
NATL1_21201  Predicted hydrolase of the metallo-beta-lactamase superfamily [KO:K12574] [EC:3.1.-.-]
NATL1_09851  Molecular chaperone DnaK, heat shock protein hsp70 [KO:K04043]
NATL1_21861  Molecular chaperone DnaK2, heat shock protein hsp70-2 [KO:K04043]
NATL1_05061  groL; GroEL2 protein (Chaperonin cpn60 2) [KO:K04077] [EC:5.6.1.7]
NATL1_18361  groEL; GroEL protein (Chaperonin cpn60) [KO:K04077] [EC:5.6.1.7]
NATL1_21771  ppk; putative Polyphosphate kinase [KO:K00937] [EC:2.7.4.1]
NATL1_03821  tRNA nucleotidyltransferase/poly(A) polymerase [KO:K00970] [EC:2.7.7.19]
Reference
  Authors
Houseley J, Tollervey D
  Title
The many pathways of RNA degradation.
  Journal
Cell 136:763-76 (2009)
DOI:10.1016/j.cell.2009.01.019
Reference
  Authors
Buttner K, Wenig K, Hopfner KP
  Title
The exosome: a macromolecular cage for controlled RNA degradation.
  Journal
Mol Microbiol 61:1372-9 (2006)
DOI:10.1111/j.1365-2958.2006.05331.x
Reference
  Authors
Schilders G, van Dijk E, Raijmakers R, Pruijn GJ
  Title
Cell and molecular biology of the exosome: how to make or break an RNA.
  Journal
Int Rev Cytol 251:159-208 (2006)
DOI:10.1016/S0074-7696(06)51005-8
Reference
  Authors
Hartung S, Hopfner KP
  Title
The exosome, plugged.
  Journal
EMBO Rep 8:456-7 (2007)
DOI:10.1038/sj.embor.7400961
Reference
  Authors
Carpousis AJ
  Title
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
  Journal
Annu Rev Microbiol 61:71-87 (2007)
DOI:10.1146/annurev.micro.61.080706.093440
Reference
  Authors
Marcaida MJ, DePristo MA, Chandran V, Carpousis AJ, Luisi BF
  Title
The RNA degradosome: life in the fast lane of adaptive molecular evolution.
  Journal
Trends Biochem Sci 31:359-65 (2006)
DOI:10.1016/j.tibs.2006.05.005
Reference
  Authors
Condon C
  Title
Maturation and degradation of RNA in bacteria.
  Journal
Curr Opin Microbiol 10:271-8 (2007)
DOI:10.1016/j.mib.2007.05.008
KO pathway
ko03018   

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