KEGG   PATHWAY: pms00020
Entry
pms00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Paenibacillus mucilaginosus KNP414
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
pms00020  Citrate cycle (TCA cycle)
pms00020

Module
pms_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:pms00020]
pms_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:pms00020]
pms_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:pms00020]
pms_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:pms00020]
pms_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:pms00020]
Other DBs
GO: 0006099
Organism
Paenibacillus mucilaginosus KNP414 [GN:pms]
Gene
KNP414_01280  citZ; CitZ [KO:K01647] [EC:2.3.3.1]
KNP414_05968  citA; CitA [KO:K01647] [EC:2.3.3.1]
KNP414_00546  acn; Acn [KO:K01681] [EC:4.2.1.3]
KNP414_01281  icd; Icd [KO:K00031] [EC:1.1.1.42]
KNP414_02693  bfmBC; BfmBC [KO:K00382] [EC:1.8.1.4]
KNP414_06346  pdhD; PdhD [KO:K00382] [EC:1.8.1.4]
KNP414_05731  conserved hypothetical protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KNP414_05730  helicase domain protein [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KNP414_05830  sucD; SucD [KO:K01902] [EC:6.2.1.5]
KNP414_05831  sucC; SucC [KO:K01903] [EC:6.2.1.5]
KNP414_03758  sdhA; SdhA [KO:K00239] [EC:1.3.5.1]
KNP414_03759  sdhB; SdhB [KO:K00240] [EC:1.3.5.1]
KNP414_03757  succinate dehydrogenase, cytochrome b558 subunit [KO:K00241]
KNP414_01287  fumA; FumA [KO:K01676] [EC:4.2.1.2]
KNP414_03033  fumC; FumC [KO:K01679] [EC:4.2.1.2]
KNP414_01283  mdh; Mdh [KO:K00024] [EC:1.1.1.37]
KNP414_02100  mqo; Mqo [KO:K00116] [EC:1.1.5.4]
KNP414_02444  pckA1; PckA1 [KO:K01610] [EC:4.1.1.49]
KNP414_06349  pdhA; PdhA [KO:K00161] [EC:1.2.4.1]
KNP414_06348  pdhB; PdhB [KO:K00162] [EC:1.2.4.1]
KNP414_06347  Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase [KO:K00627] [EC:2.3.1.12]
KNP414_03247  pyruvate synthase subunit PorA [KO:K00169] [EC:1.2.7.1]
KNP414_03246  pyruvate/ketoisovalerate oxidoreductase [KO:K00172] [EC:1.2.7.1]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
pms00010  Glycolysis / Gluconeogenesis
pms00053  Ascorbate and aldarate metabolism
pms00061  Fatty acid biosynthesis
pms00071  Fatty acid degradation
pms00190  Oxidative phosphorylation
pms00220  Arginine biosynthesis
pms00250  Alanine, aspartate and glutamate metabolism
pms00280  Valine, leucine and isoleucine degradation
pms00350  Tyrosine metabolism
pms00470  D-Amino acid metabolism
pms00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   

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