KEGG PATHWAY: ppb00630

PATHWAY: ppb00630

Entry

ppb00630 Pathway

Name

Glyoxylate and dicarboxylate metabolism - Pseudomonas putida BIRD-1

Class

Metabolism; Carbohydrate metabolism

Pathway map

ppb00630

Glyoxylate and dicarboxylate metabolism

Module

ppb_M00012	Glyoxylate cycle [PATH:ppb00630]
ppb_M00373	Ethylmalonyl pathway [PATH:ppb00630]
ppb_M00532	Photorespiration [PATH:ppb00630]

Organism

Pseudomonas putida BIRD-1 [GN:ppb]

Gene

PPUBIRD1_1734	Isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1] [KO:K01637] [EC:4.1.3.1]
PPUBIRD1_0392	glcB; GlcB [KO:K01638] [EC:2.3.3.9]
PPUBIRD1_0698	malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] [KO:K00024] [EC:1.1.1.37]
PPUBIRD1_1658	gltA; GltA [KO:K01647] [EC:2.3.3.1]
PPUBIRD1_2077	Citrate synthase; K01647 citrate synthase [EC:2.3.3.1] [KO:K01647] [EC:2.3.3.1]
PPUBIRD1_3350	Aconitate hydratase; K01681 aconitate hydratase 1 / homoaconitase [EC:4.2.1.3 4.2.1.-] [KO:K01681] [EC:4.2.1.- 4.2.1.3]
PPUBIRD1_3539	acnA; protein AcnA [KO:K01681] [EC:4.2.1.- 4.2.1.3]
PPUBIRD1_3347	Aconitate hydratase 2; K01682 aconitate hydratase 2 / 2-methylisocitrate dehydratase [EC:4.2.1.3 4.2.1.99] [KO:K01682] [EC:4.2.1.99 4.2.1.3]
PPUBIRD1_4333	Acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
PPUBIRD1_0632	Acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
PPUBIRD1_2008	Beta-ketothiolase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
PPUBIRD1_3599	atoB; protein AtoB [KO:K00626] [EC:2.3.1.9]
PPUBIRD1_3436	Acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] [KO:K00626] [EC:2.3.1.9]
PPUBIRD1_2017	Glycolate oxidase subunit glcD; K00104 glycolate oxidase [EC:1.1.3.15] [KO:K00104] [EC:1.1.3.15]
PPUBIRD1_2016	glcE; GlcE [KO:K11472]
PPUBIRD1_2015	glcF; GlcF [KO:K11473]
PPUBIRD1_0518	katA; protein KatA [KO:K03781] [EC:1.11.1.6]
PPUBIRD1_0143	katE; KatE [KO:K03781] [EC:1.11.1.6]
PPUBIRD1_2848	Catalase domain protein; K03781 catalase [EC:1.11.1.6] [KO:K03781] [EC:1.11.1.6]
PPUBIRD1_3849	phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
PPUBIRD1_3716	HAD family hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
PPUBIRD1_0122	HAD family hydrolase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
PPUBIRD1_0454	phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18] [KO:K01091] [EC:3.1.3.18]
PPUBIRD1_1443	Glutamate--putrescine ligase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_2584	Glutamate--putrescine ligase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_3473	Glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_5092	Glutamate--putrescine ligase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_4978	Glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_4979	Glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_1351	Glutamate--putrescine ligase; K01915 glutamine synthetase [EC:6.3.1.2] [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_4835	glnA; protein GlnA [KO:K01915] [EC:6.3.1.2]
PPUBIRD1_0353	glyA; GlyA protein [KO:K00600] [EC:2.1.2.1]
PPUBIRD1_0711	glyA_2; GlyA_2 [KO:K00600] [EC:2.1.2.1]
PPUBIRD1_4988	Glycine cleavage system H protein 2; K02437 glycine cleavage system H protein [KO:K02437]
PPUBIRD1_1039	Glycine cleavage system H protein 1; K02437 glycine cleavage system H protein [KO:K02437]
PPUBIRD1_1559	gcl; Gcl [KO:K01608] [EC:4.1.1.47]
PPUBIRD1_1558	Hydroxypyruvate isomerase; K01816 hydroxypyruvate isomerase [EC:5.3.1.22] [KO:K01816] [EC:5.3.1.22]
PPUBIRD1_1557	glxR; GlxR [KO:K00042] [EC:1.1.1.60]
PPUBIRD1_2558	glycerate kinase; K00865 glycerate kinase [EC:2.7.1.31] [KO:K00865] [EC:2.7.1.31]
PPUBIRD1_1556	hydroxypyruvate reductase; K00050 hydroxypyruvate reductase [EC:1.1.1.81] [KO:K00050] [EC:1.1.1.81]
PPUBIRD1_1074	Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16] [KO:K01625] [EC:4.1.3.16 4.1.2.14]
PPUBIRD1_3465	Formate dehydrogenase; K00126 formate dehydrogenase, delta subunit [EC:1.2.1.2] [KO:K00126] [EC:1.2.1.2]
PPUBIRD1_0527	Molybdopterin oxidoreductase Fe4S4 region; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
PPUBIRD1_0528	Formate dehydrogenase-O major subunit; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
PPUBIRD1_3466	Formate dehydrogenase subunit alpha; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2] [KO:K00123] [EC:1.2.1.2]
PPUBIRD1_0529	Formate dehydrogenase subunit beta; K00124 formate dehydrogenase, beta subunit [KO:K00124]
PPUBIRD1_3467	NADH dehydrogenase (quinone); K00124 formate dehydrogenase, beta subunit [KO:K00124]
PPUBIRD1_0530	Formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit [KO:K00127]
PPUBIRD1_3468	Formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit [KO:K00127]
PPUBIRD1_0358	purU; protein PurU [KO:K01433] [EC:3.5.1.10]
PPUBIRD1_4195	purU_2; PurU_2 [KO:K01433] [EC:3.5.1.10]

Compound

C00007	Oxygen
C00011	CO2
C00014	NH3
C00022	Pyruvate
C00024	Acetyl-CoA
C00025	L-Glutamate
C00026	2-Oxoglutarate
C00027	Hydrogen peroxide
C00036	Oxaloacetate
C00037	Glycine
C00042	Succinate
C00048	Glyoxylate
C00058	Formate
C00064	L-Glutamine
C00065	L-Serine
C00091	Succinyl-CoA
C00100	Propanoyl-CoA
C00136	Butanoyl-CoA
C00149	(S)-Malate
C00158	Citrate
C00160	Glycolate
C00168	Hydroxypyruvate
C00197	3-Phospho-D-glycerate
C00209	Oxalate
C00258	D-Glycerate
C00266	Glycolaldehyde
C00311	Isocitrate
C00313	Oxalyl-CoA
C00332	Acetoacetyl-CoA
C00417	cis-Aconitate
C00552	meso-Tartaric acid
C00683	(S)-Methylmalonyl-CoA
C00798	Formyl-CoA
C00877	Crotonoyl-CoA
C00888	Pentanoyl-CoA
C00898	(R,R)-Tartaric acid
C00975	Dihydroxyfumarate
C00988	2-Phosphoglycolate
C01127	4-Hydroxy-2-oxoglutarate
C01146	2-Hydroxy-3-oxopropanoate
C01182	D-Ribulose 1,5-bisphosphate
C01213	(R)-Methylmalonyl-CoA
C01380	Ethylene glycol
C01989	3-Ethylmalate
C01990	3-Oxalomalate
C02123	3-Propylmalate
C02405	Formyl phosphate
C03217	2-Hydroxy-3-oxoadipate
C03459	2-Hydroxy-3-oxosuccinate
C03548	trans-2,3-Epoxysuccinate
C03561	(R)-3-Hydroxybutanoyl-CoA
C04348	(3S)-3-Carboxy-3-hydroxypropanoyl-CoA
C06027	L-erythro-3-Methylmalyl-CoA
C06028	Mesaconyl-CoA
C06049	N-Formylderivatives
C18026	(2S)-Ethylmalonyl-CoA
C18324	(2S)-Methylsuccinyl-CoA
C20238	(2R)-Ethylmalonyl-CoA

Reference

PMID:10978349 (EC5.3.1.22)

Authors

Njau RK, Herndon CA, Hawes JW.

Title

Novel beta -hydroxyacid dehydrogenases in Escherichia coli and Haemophilusinfluenzae.

Journal

J Biol Chem 275:38780-6 (2000)

Reference

PMID:18065535

Authors

Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G

Title

Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.

Journal

J Bacteriol 190:1366-74 (2008)

Reference

PMID:18819910

Authors

Erb TJ, Retey J, Fuchs G, Alber BE

Title

Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.

Journal

J Biol Chem 283:32283-93 (2008)

KO pathway

ko00630

All links

Pathway (2)   
   KEGG MODULE (1)   
   BioSystems (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (51)   
   KEGG GENES (51)   
All databases (54)   

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