KEGG PATHWAY: ppm00240

PATHWAY: ppm00240

Entry

ppm00240 Pathway

Name

Pyrimidine metabolism - Paenibacillus polymyxa SC2

Class

Metabolism; Nucleotide metabolism

Pathway map

ppm00240

Pyrimidine metabolism

Module

ppm_M00046	Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:ppm00240]
ppm_M00051	Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH:ppm00240]
ppm_M00052	Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:ppm00240]
ppm_M00053	Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH:ppm00240]

Other DBs

BSID:

174237

GO:

0006220

Organism

Paenibacillus polymyxa SC2 [GN:ppm]

Gene

PPSC2_c3521	carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5] [KO:K01955] [EC:6.3.5.5]
PPSC2_c3522	carbamoyl-phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] [KO:K01956] [EC:6.3.5.5]
PPSC2_c3524	aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] [KO:K00609] [EC:2.1.3.2]
PPSC2_c3523	dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] [KO:K01465] [EC:3.5.2.3]
PPSC2_c1920	dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] [KO:K00226] [EC:1.3.98.1]
PPSC2_c5294	dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] [KO:K00226] [EC:1.3.98.1]
PPSC2_c3519	orotate phosphoribosyltransferase; K00762 orotate phosphoribosyltransferase [EC:2.4.2.10] [KO:K00762] [EC:2.4.2.10]
PPSC2_c3520	orotidine 5-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] [KO:K01591] [EC:4.1.1.23]
PPSC2_c3145	cytidylate kinase; K00945 cytidylate kinase [EC:2.7.4.14] [KO:K00945] [EC:2.7.4.14]
PPSC2_c2128	uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] [KO:K09903] [EC:2.7.4.22]
PPSC2_c3117	nucleoside diphosphate kinase (ndk) (ndp kinase)(nucleoside-2-p kinase); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] [KO:K00940] [EC:2.7.4.6]
PPSC2_c2147	polynucleotide phosphorylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] [KO:K00962] [EC:2.7.7.8]
PPSC2_c4224	ribonuclease ph/ham1 protein; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] [KO:K02428] [EC:3.6.1.19]
PPSC2_c0140	ctp synthase (utp-ammonia lyase); K01937 CTP synthase [EC:6.3.4.2] [KO:K01937] [EC:6.3.4.2]
PPSC2_c4747	DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] [KO:K03040] [EC:2.7.7.6]
PPSC2_c4787	DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] [KO:K03043] [EC:2.7.7.6]
PPSC2_c4786	DNA-directed RNA polymerase subunit beta; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] [KO:K03046] [EC:2.7.7.6]
PPSC2_c0138	DNA-directed RNA polymerase subunit delta; K03048 DNA-directed RNA polymerase subunit delta [KO:K03048]
PPSC2_c3303	DNA-directed RNA polymerase omega subunit (transcriptase omega chain); K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] [KO:K03060] [EC:2.7.7.6]
PPSC2_c1766	DNA polymerase i; K02335 DNA polymerase I [EC:2.7.7.7] [KO:K02335] [EC:2.7.7.7]
PPSC2_c1740	DNA polymerase iii; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7] [KO:K02337] [EC:2.7.7.7]
PPSC2_c2135	DNA polymerase iii; K03763 DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7] [KO:K03763] [EC:2.7.7.7]
PPSC2_c0002	DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] [KO:K02338] [EC:2.7.7.7]
PPSC2_c0151	DNA polymerase iii; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] [KO:K02343] [EC:2.7.7.7]
PPSC2_c3651	DNA polymerase iii; K02340 DNA polymerase III subunit delta [EC:2.7.7.7] [KO:K02340] [EC:2.7.7.7]
PPSC2_c0019	DNA polymerase iii; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] [KO:K02341] [EC:2.7.7.7]
PPSC2_c1912	DNA polymerase iii; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
PPSC2_c2613	deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] [KO:K01494] [EC:3.5.4.13]
PPSC2_p0222	Deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] [KO:K01494] [EC:3.5.4.13]
PPSC2_c0292	uridine kinase; K00876 uridine kinase [EC:2.7.1.48] [KO:K00876] [EC:2.7.1.48]
PPSC2_c4966	uracil phosphoribosyltransferase; K00761 uracil phosphoribosyltransferase [EC:2.4.2.9] [KO:K00761] [EC:2.4.2.9]
PPSC2_c3525	uracil phosphoribosyltransferase; K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9] [KO:K02825] [EC:2.4.2.9]
PPSC2_c4658	pyrimidine-nucleoside phosphorylase (pynp); K00756 pyrimidine-nucleoside phosphorylase [EC:2.4.2.2] [KO:K00756] [EC:2.4.2.2]
PPSC2_c0175	thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
PPSC2_c4368	ferredoxin--nadp reductase 2; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
PPSC2_c2197	pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
PPSC2_c1419	ferredoxin--nadp reductase 2; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
PPSC2_c4575	thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
PPSC2_c5077	anaerobic ribonucleoside-triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] [KO:K00527] [EC:1.17.4.2]
PPSC2_p0632	Anaerobic ribonucleoside-triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] [KO:K00527] [EC:1.17.4.2]
PPSC2_c0512	ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
PPSC2_c1970	ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
PPSC2_c0511	ribonucleoside-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] [KO:K00526] [EC:1.17.4.1]
PPSC2_c1969	ribonucleoside-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] [KO:K00526] [EC:1.17.4.1]
PPSC2_p0091	Ribonucleoside-diphosphate reductase; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] [KO:K00526] [EC:1.17.4.1]
PPSC2_c2150	deoxyuridine 5-triphosphate nucleotidohydrolase dut; K01520 dUTP pyrophosphatase [EC:3.6.1.23] [KO:K01520] [EC:3.6.1.23]
PPSC2_c2885	thymidylate synthase 2; K00560 thymidylate synthase [EC:2.1.1.45] [KO:K00560] [EC:2.1.1.45]
PPSC2_c4662	cytidine deaminase; K01489 cytidine deaminase [EC:3.5.4.5] [KO:K01489] [EC:3.5.4.5]
PPSC2_c3187	purine nucleoside phosphorylase; K03783 purine-nucleoside phosphorylase [EC:2.4.2.1] [KO:K03783] [EC:2.4.2.1]
PPSC2_c4659	purine nucleoside phosphorylase; K03784 purine-nucleoside phosphorylase [EC:2.4.2.1] [KO:K03784] [EC:2.4.2.1]
PPSC2_c0942	deoxyguanosine kinase; K15519 deoxyadenosine/deoxycytidine kinase [EC:2.7.1.76 2.7.1.74] [KO:K15519] [EC:2.7.1.74 2.7.1.76]
PPSC2_c3655	cmp/dcmp deaminase; K01493 dCMP deaminase [EC:3.5.4.12] [KO:K01493] [EC:3.5.4.12]
PPSC2_c3202	thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21] [KO:K00857] [EC:2.7.1.21]
PPSC2_p0037	Thymidine kinase; K00857 thymidine kinase [EC:2.7.1.21] [KO:K00857] [EC:2.7.1.21]
PPSC2_c0016	thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] [KO:K00943] [EC:2.7.4.9]
PPSC2_p0360	Thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] [KO:K00943] [EC:2.7.4.9]
PPSC2_c0461	5'-nucleotidase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] [KO:K01119] [EC:3.1.4.16]
PPSC2_c4646	5'-nucleotidase; K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase [EC:3.1.4.16] [KO:K01119] [EC:3.1.4.16]

Compound

C00015	UDP
C00029	UDP-glucose
C00039	DNA
C00046	RNA
C00055	CMP
C00063	CTP
C00064	L-Glutamine
C00075	UTP
C00086	Urea
C00099	beta-Alanine
C00105	UMP
C00106	Uracil
C00112	CDP
C00119	5-Phospho-alpha-D-ribose 1-diphosphate
C00169	Carbamoyl phosphate
C00178	Thymine
C00214	Thymidine
C00222	3-Oxopropanoate
C00239	dCMP
C00295	Orotate
C00299	Uridine
C00337	(S)-Dihydroorotate
C00342	Thioredoxin
C00343	Thioredoxin disulfide
C00363	dTDP
C00364	dTMP
C00365	dUMP
C00380	Cytosine
C00383	Malonate
C00429	5,6-Dihydrouracil
C00438	N-Carbamoyl-L-aspartate
C00458	dCTP
C00459	dTTP
C00460	dUTP
C00475	Cytidine
C00526	Deoxyuridine
C00672	2-Deoxy-D-ribose 1-phosphate
C00705	dCDP
C00813	Barbiturate
C00881	Deoxycytidine
C00906	5,6-Dihydrothymine
C01013	3-Hydroxypropanoate
C01103	Orotidine 5'-phosphate
C01168	Pseudouridine 5'-phosphate
C01346	dUDP
C01368	3'-UMP
C01563	Carbamate
C02067	Pseudouridine
C02170	Methylmalonate
C02354	2',3'-Cyclic CMP
C02355	2',3'-Cyclic UMP
C02376	5-Methylcytosine
C02642	3-Ureidopropionate
C03997	5-Hydroxymethyldeoxycytidylate
C05100	3-Ureidoisobutyrate
C05145	3-Aminoisobutyric acid
C05281	5-Methylbarbiturate
C05822	3'-CMP
C06198	P1,P4-Bis(5'-uridyl) tetraphosphate
C11038	2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039	2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607	3-Oxo-3-ureidopropanoate
C20231	(Z)-3-Ureidoacrylate peracid
C20249	(Z)-3-Peroxyaminoacrylate
C20253	Aminoacrylate
C20254	Ureidoacrylate

KO pathway

ko00240

All links

Pathway (3)   
   KEGG MODULE (2)   
   BioSystems (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (58)   
   KEGG GENES (58)   
All databases (62)   

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