KEGG   PATHWAY: ppp00970
Entry
ppp00970                    Pathway                                
Name
Aminoacyl-tRNA biosynthesis - Physcomitrium patens (spreading earthmoss)
Class
Genetic Information Processing; Translation
Pathway map
ppp00970  Aminoacyl-tRNA biosynthesis
ppp00970

Organism
Physcomitrium patens (spreading earthmoss) [GN:ppp]
Gene
2637321  trnA; tRNA-Ala [KO:K14218]
2637328  trnA; tRNA-Ala [KO:K14218]
2546738  trnR; tRNA-Arg [KO:K14219]
3989077  PhpafMt09; tRNA-Arg [KO:K14219]
2546697  trnR; tRNA-Arg [KO:K14219]
2546725  trnR; tRNA-Arg [KO:K14219]
3989086  PhpafMt18; tRNA-Arg [KO:K14219]
2546719  trnN; tRNA-Asn [KO:K14220]
2546736  trnN; tRNA-Asn [KO:K14220]
2546764  trnD; tRNA-Asp [KO:K14221]
3989090  PhpafMt22; tRNA-Asp [KO:K14221]
2546786  trnC; tRNA-Cys [KO:K14222]
3989071  PhpafMt03; tRNA-Cys [KO:K14222]
2546741  trnQ; tRNA-Gln [KO:K14223]
3989073  PhpafMt05; tRNA-Gln [KO:K14223]
2546755  trnE; tRNA-Glu [KO:K14224]
2546792  trnG; tRNA-Gly [KO:K14225]
3989085  PhpafMt17; tRNA-Gly [KO:K14225]
2637322  trnG; tRNA-Gly [KO:K14225]
3989076  PhpafMt08; tRNA-Gly [KO:K14225]
2546782  trnH; tRNA-His [KO:K14226]
3989082  PhpafMt14; tRNA-His [KO:K14226]
2637323  trnI; tRNA-Ile [KO:K14227]
2637324  trnI; tRNA-Ile [KO:K14227]
3989084  PhpafMt16; tRNA-Leu [KO:K14228]
2546762  trnL; tRNA-Leu [KO:K14228]
2546713  trnL; tRNA-Leu [KO:K14228]
2637325  trnK; tRNA-Lys [KO:K14229]
3989070  PhpafMt02; tRNA-Lys [KO:K14229]
2546701  trnM; tRNA-Met [KO:K14230]
2546784  trnfM; tRNA-Met [KO:K14230]
3989069  PhpafMt01; tRNA-Ile [KO:K14230]
3989081  PhpafMt13; tRNA-Met [KO:K14230]
2546774  trnI; tRNA-Ile [KO:K14230]
2546757  trnF; tRNA-Phe [KO:K14231]
3989072  PhpafMt04; tRNA-Phe [KO:K14231]
2546718  trnP; tRNA-Pro [KO:K14232]
3989079  PhpafMt11; tRNA-Pro [KO:K14232]
2546716  trnS; tRNA-Ser [KO:K14233]
3989075  PhpafMt07; tRNA-Ser [KO:K14233]
2546726  trnS; tRNA-Ser [KO:K14233]
2546727  trnS; tRNA-Ser [KO:K14233]
3989092  PhpafMt24; tRNA-Thr [KO:K14234]
2546737  trnT; tRNA-Thr [KO:K14234]
2546728  trnT; tRNA-Thr [KO:K14234]
2546740  trnW; tRNA-Trp [KO:K14235]
3989088  PhpafMt20; tRNA-Trp [KO:K14235]
2546722  trnY; tRNA-Tyr [KO:K14236]
3989078  PhpafMt10; tRNA-Tyr [KO:K14236]
2637327  trnV; tRNA-Val [KO:K14237]
2546715  trnV; tRNA-Val [KO:K14237]
2546721  trnV; tRNA-Val [KO:K14237]
112277462  glutamate--tRNA ligase, cytoplasmic-like [KO:K01885] [EC:6.1.1.17]
112278405  glutamate--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01885] [EC:6.1.1.17]
112289605  glutamate--tRNA ligase, cytoplasmic-like [KO:K01885] [EC:6.1.1.17]
112278367  glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like [KO:K02433] [EC:6.3.5.6 6.3.5.7]
112293300  glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial-like [KO:K02433] [EC:6.3.5.6 6.3.5.7]
112274535  glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [KO:K02434] [EC:6.3.5.6 6.3.5.7]
112278918  uncharacterized protein LOC112278918 [KO:K02435] [EC:6.3.5.6 6.3.5.7]
112277988  glutamine--tRNA ligase, cytoplasmic-like [KO:K01886] [EC:6.1.1.18]
112275900  alanine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01872] [EC:6.1.1.7]
112278428  alanine--tRNA ligase-like [KO:K01872] [EC:6.1.1.7]
112274283  aspartate--tRNA ligase 1, cytoplasmic-like isoform X1 [KO:K22503] [EC:6.1.1.12]
112273651  aspartate--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01876] [EC:6.1.1.12]
112289651  asparagine--tRNA ligase, cytoplasmic 1-like [KO:K01893] [EC:6.1.1.22]
112289564  asparagine--tRNA ligase, cytoplasmic 1-like [KO:K01893] [EC:6.1.1.22]
112290228  asparagine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 [KO:K01893] [EC:6.1.1.22]
112283856  glycine--tRNA ligase, mitochondrial 1-like [KO:K01880] [EC:6.1.1.14]
112283990  glycine--tRNA ligase, chloroplastic/mitochondrial 2-like [KO:K14164] [EC:6.1.1.14]
112273352  threonine--tRNA ligase, mitochondrial 1-like isoform X1 [KO:K01868] [EC:6.1.1.3]
112278747  threonine--tRNA ligase, chloroplastic/mitochondrial 2-like [KO:K01868] [EC:6.1.1.3]
112291954  threonine--tRNA ligase, chloroplastic/mitochondrial 2-like isoform X1 [KO:K01868] [EC:6.1.1.3]
112281216  serine--tRNA ligase-like isoform X1 [KO:K01875] [EC:6.1.1.11]
112282777  serine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01875] [EC:6.1.1.11]
112290605  serine--tRNA ligase-like [KO:K01875] [EC:6.1.1.11]
112276342  cysteine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01883] [EC:6.1.1.16]
112286467  cysteine--tRNA ligase, cytoplasmic-like isoform X1 [KO:K01883] [EC:6.1.1.16]
112292140  cysteine--tRNA ligase, cytoplasmic-like isoform X1 [KO:K01883] [EC:6.1.1.16]
112290506  probable methionine--tRNA ligase [KO:K01874] [EC:6.1.1.10]
112292316  methionine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01874] [EC:6.1.1.10]
112293642  uncharacterized protein LOC112293642 [KO:K00604] [EC:2.1.2.9]
112278015  valine--tRNA ligase, mitochondrial 1-like [KO:K01873] [EC:6.1.1.9]
112289825  valine--tRNA ligase, chloroplastic/mitochondrial 2-like isoform X1 [KO:K01873] [EC:6.1.1.9]
112283068  leucine--tRNA ligase, cytoplasmic-like isoform X1 [KO:K01869] [EC:6.1.1.4]
112284960  leucine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01869] [EC:6.1.1.4]
112294387  isoleucine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01870] [EC:6.1.1.5]
112293672  isoleucine--tRNA ligase, cytoplasmic-like isoform X1 [KO:K01870] [EC:6.1.1.5]
112281641  lysine--tRNA ligase-like [KO:K04567] [EC:6.1.1.6]
112289983  lysine--tRNA ligase-like [KO:K04567] [EC:6.1.1.6]
112295780  uncharacterized protein LOC112295780 isoform X1 [KO:K04567] [EC:6.1.1.6]
112288833  arginine--tRNA ligase, cytoplasmic-like [KO:K01887] [EC:6.1.1.19]
112274410  proline--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01881] [EC:6.1.1.15]
112279202  proline--tRNA ligase, cytoplasmic-like [KO:K01881] [EC:6.1.1.15]
112284119  histidine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01892] [EC:6.1.1.21]
112285188  histidine--tRNA ligase, chloroplastic/mitochondrial-like isoform X1 [KO:K01892] [EC:6.1.1.21]
112276212  phenylalanine--tRNA ligase alpha subunit, cytoplasmic-like [KO:K01889] [EC:6.1.1.20]
112282148  phenylalanine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01889] [EC:6.1.1.20]
112272883  phenylalanine--tRNA ligase beta subunit, cytoplasmic-like [KO:K01890] [EC:6.1.1.20]
112274657  phenylalanine--tRNA ligase beta subunit, cytoplasmic-like [KO:K01890] [EC:6.1.1.20]
112279373  tyrosine--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01866] [EC:6.1.1.1]
112283512  tyrosine--tRNA ligase 1, cytoplasmic-like [KO:K01866] [EC:6.1.1.1]
112273755  tryptophan--tRNA ligase, cytoplasmic-like [KO:K01867] [EC:6.1.1.2]
112290144  tryptophan--tRNA ligase, chloroplastic/mitochondrial-like [KO:K01867] [EC:6.1.1.2]
Compound
C00025  L-Glutamate
C00037  Glycine
C00041  L-Alanine
C00047  L-Lysine
C00049  L-Aspartate
C00062  L-Arginine
C00064  L-Glutamine
C00065  L-Serine
C00073  L-Methionine
C00078  L-Tryptophan
C00079  L-Phenylalanine
C00082  L-Tyrosine
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00123  L-Leucine
C00135  L-Histidine
C00148  L-Proline
C00152  L-Asparagine
C00183  L-Valine
C00188  L-Threonine
C00234  10-Formyltetrahydrofolate
C00407  L-Isoleucine
C00886  L-Alanyl-tRNA
C01005  O-Phospho-L-serine
C01931  L-Lysyl-tRNA
C02047  L-Leucyl-tRNA
C02163  L-Arginyl-tRNA(Arg)
C02282  Glutaminyl-tRNA
C02412  Glycyl-tRNA(Gly)
C02430  L-Methionyl-tRNA
C02553  L-Seryl-tRNA(Ser)
C02554  L-Valyl-tRNA(Val)
C02702  L-Prolyl-tRNA(Pro)
C02839  L-Tyrosyl-tRNA(Tyr)
C02984  L-Aspartyl-tRNA(Asp)
C02987  L-Glutamyl-tRNA(Glu)
C02988  L-Histidyl-tRNA(His)
C02992  L-Threonyl-tRNA(Thr)
C03125  L-Cysteinyl-tRNA(Cys)
C03127  L-Isoleucyl-tRNA(Ile)
C03294  N-Formylmethionyl-tRNA
C03402  L-Asparaginyl-tRNA(Asn)
C03511  L-Phenylalanyl-tRNA(Phe)
C03512  L-Tryptophanyl-tRNA(Trp)
C06112  L-Glutamyl-tRNA(Gln)
C06113  L-Aspartyl-tRNA(Asn)
C06481  L-Seryl-tRNA(Sec)
C06482  L-Selenocysteinyl-tRNA(Sec)
C16138  L-Pyrrolysine
C16638  O-Phosphoseryl-tRNA(Sec)
C17022  O-Phosphoseryl-tRNA(Cys)
C17027  L-Pyrrolysyl-tRNA(Pyl)
Reference
PMID:18252769
  Authors
Sheppard K, Yuan J, Hohn MJ, Jester B, Devine KM, Soll D
  Title
From one amino acid to another: tRNA-dependent amino acid biosynthesis.
  Journal
Nucleic Acids Res 36:1813-25 (2008)
DOI:10.1093/nar/gkn015
Reference
PMID:15314242
  Authors
Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D
  Title
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.
  Journal
Proc Natl Acad Sci U S A 101:12450-4 (2004)
DOI:10.1073/pnas.0405362101
Related
pathway
ppp00250  Alanine, aspartate and glutamate metabolism
ppp00260  Glycine, serine and threonine metabolism
ppp00270  Cysteine and methionine metabolism
ppp00290  Valine, leucine and isoleucine biosynthesis
ppp00300  Lysine biosynthesis
ppp00330  Arginine and proline metabolism
ppp00340  Histidine metabolism
ppp00380  Tryptophan metabolism
ppp00400  Phenylalanine, tyrosine and tryptophan biosynthesis
KO pathway
ko00970   

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (103)   
   KEGG GENES (103)   
All databases (104)   

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