KEGG PATHWAY: rpc00240

PATHWAY: rpc00240

Entry

rpc00240 Pathway

Name

Pyrimidine metabolism - Rhodopseudomonas palustris BisB18

Class

Metabolism; Nucleotide metabolism

Pathway map

rpc00240

Pyrimidine metabolism

Module

rpc_M00046	Pyrimidine degradation, uracil => beta-alanine, thymine => 3-aminoisobutanoate [PATH:rpc00240]
rpc_M00051	Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH:rpc00240]
rpc_M00052	Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH:rpc00240]
rpc_M00053	Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH:rpc00240]

Other DBs

BSID:

32611

GO:

0006220

Organism

Rhodopseudomonas palustris BisB18 [GN:rpc]

Gene

RPC_3835	carB; carbamoyl phosphate synthase large subunit [KO:K01955] [EC:6.3.5.5]
RPC_0960	carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5] [KO:K01956] [EC:6.3.5.5]
RPC_2247	pyrB; aspartate carbamoyltransferase catalytic subunit [KO:K00609] [EC:2.1.3.2]
RPC_4330	dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] [KO:K01465] [EC:3.5.2.3]
RPC_2246	dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] [KO:K01465] [EC:3.5.2.3]
RPC_0755	dihydroorotate dehydrogenase 2; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] [KO:K00226] [EC:1.3.98.1]
RPC_4858	pyrE; orotate phosphoribosyltransferase [KO:K00762] [EC:2.4.2.10]
RPC_0333	orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] [KO:K01591] [EC:4.1.1.23]
RPC_0398	cmk; cytidylate kinase [KO:K00945] [EC:2.7.4.14]
RPC_2438	pyrH; uridylate kinase [KO:K09903] [EC:2.7.4.22]
RPC_2318	ndk; nucleoside diphosphate kinase [KO:K00940] [EC:2.7.4.6]
RPC_0484	polynucleotide phosphorylase/polyadenylase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] [KO:K00962] [EC:2.7.7.8]
RPC_0324	putative deoxyribonucleotide triphosphate pyrophosphatase; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] [KO:K02428] [EC:3.6.1.19]
RPC_2473	pyrG; CTP synthetase [KO:K01937] [EC:6.3.4.2]
RPC_3424	DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] [KO:K03040] [EC:2.7.7.6]
RPC_3458	rpoB; DNA-directed RNA polymerase subunit beta [KO:K03043] [EC:2.7.7.6]
RPC_3457	DNA-directed RNA polymerase subunit beta'; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] [KO:K03046] [EC:2.7.7.6]
RPC_2634	DNA-directed RNA polymerase subunit omega; K03060 DNA-directed RNA polymerase subunit omega [EC:2.7.7.6] [KO:K03060] [EC:2.7.7.6]
RPC_4857	DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] [KO:K02335] [EC:2.7.7.7]
RPC_2433	dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
RPC_0002	DNA polymerase III subunit beta; K02338 DNA polymerase III subunit beta [EC:2.7.7.7] [KO:K02338] [EC:2.7.7.7]
RPC_4848	DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7] [KO:K02343] [EC:2.7.7.7]
RPC_0286	holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
RPC_2704	DNA polymerase III subunit delta'; K02341 DNA polymerase III subunit delta' [EC:2.7.7.7] [KO:K02341] [EC:2.7.7.7]
RPC_0297	DNA polymerase III subunit epsilon; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
RPC_3293	exonuclease; K02342 DNA polymerase III subunit epsilon [EC:2.7.7.7] [KO:K02342] [EC:2.7.7.7]
RPC_2315	DNA polymerase III subunit chi; K02339 DNA polymerase III subunit chi [EC:2.7.7.7] [KO:K02339] [EC:2.7.7.7]
RPC_4903	2'-deoxycytidine 5'-triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] [KO:K01494] [EC:3.5.4.13]
RPC_1525	deoxycytidine triphosphate deaminase; K01494 dCTP deaminase [EC:3.5.4.13] [KO:K01494] [EC:3.5.4.13]
RPC_1152	5'-nucleotidase-like protein; K01081 5'-nucleotidase [EC:3.1.3.5] [KO:K01081] [EC:3.1.3.5]
RPC_2519	surE; stationary phase survival protein SurE [KO:K03787] [EC:3.1.3.5]
RPC_2752	mazG; nucleoside triphosphate pyrophosphohydrolase [KO:K04765] [EC:3.6.1.8]
RPC_4421	cyclic nucleotide-regulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
RPC_3838	thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
RPC_1458	FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
RPC_4596	FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] [KO:K00384] [EC:1.8.1.9]
RPC_3517	anaerobic ribonucleoside triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2] [KO:K00527] [EC:1.17.4.2]
RPC_2380	ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
RPC_3519	ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] [KO:K00525] [EC:1.17.4.1]
RPC_3518	ribonucleotide-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1] [KO:K00526] [EC:1.17.4.1]
RPC_0381	dut; deoxyuridine 5'-triphosphate nucleotidohydrolase [KO:K01520] [EC:3.6.1.23]
RPC_3266	thyA; thymidylate synthase [KO:K00560] [EC:2.1.1.45]
RPC_4804	hypothetical protein; K01489 cytidine deaminase [EC:3.5.4.5] [KO:K01489] [EC:3.5.4.5]
RPC_4089	thymidine phosphorylase; K00758 thymidine phosphorylase [EC:2.4.2.4] [KO:K00758] [EC:2.4.2.4]
RPC_2703	thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] [KO:K00943] [EC:2.7.4.9]

Compound

C00015	UDP
C00029	UDP-glucose
C00039	DNA
C00046	RNA
C00055	CMP
C00063	CTP
C00064	L-Glutamine
C00075	UTP
C00086	Urea
C00099	beta-Alanine
C00105	UMP
C00106	Uracil
C00112	CDP
C00119	5-Phospho-alpha-D-ribose 1-diphosphate
C00169	Carbamoyl phosphate
C00178	Thymine
C00214	Thymidine
C00222	3-Oxopropanoate
C00239	dCMP
C00295	Orotate
C00299	Uridine
C00337	(S)-Dihydroorotate
C00342	Thioredoxin
C00343	Thioredoxin disulfide
C00363	dTDP
C00364	dTMP
C00365	dUMP
C00380	Cytosine
C00383	Malonate
C00429	5,6-Dihydrouracil
C00438	N-Carbamoyl-L-aspartate
C00458	dCTP
C00459	dTTP
C00460	dUTP
C00475	Cytidine
C00526	Deoxyuridine
C00672	2-Deoxy-D-ribose 1-phosphate
C00705	dCDP
C00813	Barbiturate
C00881	Deoxycytidine
C00906	5,6-Dihydrothymine
C01013	3-Hydroxypropanoate
C01103	Orotidine 5'-phosphate
C01168	Pseudouridine 5'-phosphate
C01346	dUDP
C01368	3'-UMP
C01563	Carbamate
C02067	Pseudouridine
C02170	Methylmalonate
C02354	2',3'-Cyclic CMP
C02355	2',3'-Cyclic UMP
C02376	5-Methylcytosine
C02642	3-Ureidopropionate
C03997	5-Hydroxymethyldeoxycytidylate
C05100	3-Ureidoisobutyrate
C05145	3-Aminoisobutyric acid
C05281	5-Methylbarbiturate
C05822	3'-CMP
C06198	P1,P4-Bis(5'-uridyl) tetraphosphate
C11038	2'-Deoxy-5-hydroxymethylcytidine-5'-diphosphate
C11039	2'-Deoxy-5-hydroxymethylcytidine-5'-triphosphate
C15607	3-Oxo-3-ureidopropanoate
C20231	(Z)-3-Ureidoacrylate peracid
C20249	(Z)-3-Peroxyaminoacrylate
C20253	Aminoacrylate
C20254	Ureidoacrylate

KO pathway

ko00240

All links

Pathway (3)   
   KEGG MODULE (2)   
   BioSystems (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG GENES (45)   
All databases (49)   

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